View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6282_low_5 (Length: 437)
Name: NF6282_low_5
Description: NF6282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6282_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 4 - 422
Target Start/End: Original strand, 47346566 - 47346984
Alignment:
| Q |
4 |
taatactgattttaaaattatgcttcagatttagttaaacgcagttatagtttattctgtctagtaatgttaatgtcactagcctgttttgtcaccaatc |
103 |
Q |
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| T |
47346566 |
taatactgattttaaaattatgcttcagatttagttaaacgcggttatagtttattctgtctagtaatattaatgtcactagcctgttttgtcaccaatc |
47346665 |
T |
|
| Q |
104 |
acttgctaatgaaaaacaaacctttcccaagccaatatacttgagtcaagaaactaatcttggctgagaaatagatatttcagcttgcagattaaagtct |
203 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47346666 |
acttgctaatgaaaaacaaatctttcccaagccaatatacttgagtcaagaaactaatcttggctgagaaatagatatttcagcttgcagattaaagtct |
47346765 |
T |
|
| Q |
204 |
ctaccacaaagaatcaggtttggggcggatagcacggataacagtatacacattggtcatgtcttagccatgcataaaatttaacctggactgctttaat |
303 |
Q |
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| T |
47346766 |
ctaccacaaaggatcaggtttggtgcggatagcacggataacagtatacacattggtcatgtcttagccatgcataaaatttaacctggactgctttaat |
47346865 |
T |
|
| Q |
304 |
cttcagcagggggatatggttgcttatagacactccatttcaaaagttcaaatttcacacttttctcttttaatctaattagagccaaagcagaaatgaa |
403 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
47346866 |
cttcagcagggggatatggttgcttatagacactccatttcaaaagttcaaatttcacacttttctcttttaatctaataagagccaaagcagaaatgaa |
47346965 |
T |
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| Q |
404 |
agaaagcaagctaagattt |
422 |
Q |
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||||||||||||||||||| |
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| T |
47346966 |
agaaagcaagctaagattt |
47346984 |
T |
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