View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6282_low_7 (Length: 333)
Name: NF6282_low_7
Description: NF6282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6282_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 18 - 328
Target Start/End: Complemental strand, 2621428 - 2621123
Alignment:
| Q |
18 |
aaaactagcacaatagcaatcattaattcgttgaatcattttttataatcaaagtttgattaattatattaaacagattacaagggatattcaaactaca |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
2621428 |
aaaactagcacaatagcaatcattaattcgttgaatcattttttataatcaaagtttgattaatta-----aacagattacaagggatattcaaactaca |
2621334 |
T |
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| Q |
118 |
tcaagatacacaactcctataaatcatgccgagtaaccttggaggtttaggatcaaaaagtctaaacatattggtcgttcacctcatgttccttataaac |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2621333 |
tcaagatacacaactcctataaatcatgccgagtaaccttggaggtttaggatcaaaaagtctaaacatattggtcgttcacctcatgttccttataaac |
2621234 |
T |
|
| Q |
218 |
tcttttagtctcactattttatccgatgtgaaacttctattttcaacattctccctaagtccaactgggttagtctcttcagcggtccatttctaaattg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2621233 |
tcttttagtctcactattttatccgatgtgaaacttctattttcaacattctccctaagtccaactgggttagtctcttcagcggtccatttctaaattg |
2621134 |
T |
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| Q |
318 |
atgatgtccat |
328 |
Q |
| |
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|||||| |||| |
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| T |
2621133 |
atgatgaccat |
2621123 |
T |
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