View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6282_low_8 (Length: 311)
Name: NF6282_low_8
Description: NF6282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6282_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 261; Significance: 1e-145; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 14 - 294
Target Start/End: Original strand, 24189355 - 24189635
Alignment:
| Q |
14 |
gagaagaacggacggaggcggagattcgcctagttgggatgccgtttgtgtcagtggcaaggactgattggatgtggaaagtgtttttaccggagggatc |
113 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
24189355 |
gagaagaacggacggaggcagagattcgcctagttgggatgccgtttgtgtcagtggcaaggactgattggatgtggaaagtgtttttaccagagggatc |
24189454 |
T |
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| Q |
114 |
ggaccgggatcatggcgcggttaatgtatgtgggccgaacgcggaggatttgtcgggtttggattatcctgatacgcttgtttttgttggtgggtttgat |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
24189455 |
ggaccgggatcatggcgcggttaatgtatgtgggccgaacgcggaggatttgtcgggtttggattatccggatacgcttgtttttgttggtgggtttgat |
24189554 |
T |
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| Q |
214 |
cctttgattgattggcaaaagaggtattatgattggttgaagaaatgtgggaaaaaagctgagttgattgaatatccaaac |
294 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |
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| T |
24189555 |
cctttgattgattggcaaaagaggtattatgattggttgaaaaaatgtggaaaaaaagctgagttgattgaatatccaaac |
24189635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 14 - 294
Target Start/End: Original strand, 24179549 - 24179829
Alignment:
| Q |
14 |
gagaagaacggacggaggcggagattcgcctagttgggatgccgtttgtgtcagtggcaaggactgattggatgtggaaagtgtttttaccggagggatc |
113 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||| ||| || ||||| |||||||| |||||||| |||||||| |
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| T |
24179549 |
gagaagaacggacggaggcggagattaacctagttgggatgccatttgtgtcggtggcaaagaccgactggatctggaaagtatttttaccagagggatc |
24179648 |
T |
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| Q |
114 |
ggaccgggatcatggcgcggttaatgtatgtgggccgaacgcggaggatttgtcgggtttggattatcctgatacgcttgtttttgttggtgggtttgat |
213 |
Q |
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||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
24179649 |
ggaccgggatcatggtgcggttaatgtatgcggcccgaacgcggaggatttgtcgggtttggattatccggatacgcttgtttttgttggtgggtttgat |
24179748 |
T |
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| Q |
214 |
cctttgattgattggcaaaagaggtattatgattggttgaagaaatgtgggaaaaaagctgagttgattgaatatccaaac |
294 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
24179749 |
cctttgattgattggcaaaagaggtattatgattggttgaaaaaatgtgggaaaaaagctgagttgattgaatatccaaac |
24179829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 68 - 293
Target Start/End: Original strand, 24113052 - 24113277
Alignment:
| Q |
68 |
tggcaaggactgattggatgtggaaagtgtttttaccggagggatcggaccgggatcatggcgcggttaatgtatgtgggccgaacgcggaggatttgtc |
167 |
Q |
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|||| ||||| |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24113052 |
tggcgaggacggattggatgtggaaagcgtttttaccggagggatcagaccgggatcatggcgcggttaatgtatgtgggccgaacgcggaggatttgtc |
24113151 |
T |
|
| Q |
168 |
gggtttggattatcctgatacgcttgtttttgttggtgggtttgatcctttgattgattggcaaaagaggtattatgattggttgaagaaatgtgggaaa |
267 |
Q |
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||||||||||||||| ||||||||||||||| ||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24113152 |
gggtttggattatccggatacgcttgtttttattggtggatttgatcctttaaatgattggcaaaagaggtattatgattggttgaagaaatgtgggaaa |
24113251 |
T |
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| Q |
268 |
aaagctgagttgattgaatatccaaa |
293 |
Q |
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||||||||||| ||| |||||||||| |
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| T |
24113252 |
aaagctgagttaattcaatatccaaa |
24113277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 72 - 293
Target Start/End: Original strand, 24169171 - 24169392
Alignment:
| Q |
72 |
aaggactgattggatgtggaaagtgtttttaccggagggatcggaccgggatcatggcgcggttaatgtatgtgggccgaacgcggaggatttgtcgggt |
171 |
Q |
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|||||| |||||| |||||| ||||||| ||||||||||||| ||||||||||||| || ||||||||| | |||||||| |||||||||||||||||| |
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| T |
24169171 |
aaggacggattggtggtggaaggtgttttgaccggagggatcgaaccgggatcatggtgctgttaatgtaagcgggccgaatgcggaggatttgtcgggt |
24169270 |
T |
|
| Q |
172 |
ttggattatcctgatacgcttgtttttgttggtgggtttgatcctttgattgattggcaaaagaggtattatgattggttgaagaaatgtgggaaaaaag |
271 |
Q |
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||||||||||| ||||||||||||||| ||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24169271 |
ttggattatccggatacgcttgtttttattggtggatttgatcctttaaatgattggcaaaagaggtattatgattggttgaagaaatgtgggaaaaaag |
24169370 |
T |
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| Q |
272 |
ctgagttgattgaatatccaaa |
293 |
Q |
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||||||||||| |||||||||| |
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| T |
24169371 |
ctgagttgattcaatatccaaa |
24169392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 54 - 294
Target Start/End: Original strand, 24152326 - 24152566
Alignment:
| Q |
54 |
gccgtttgtgtcagtggcaaggactgattggatgtggaaagtgtttttaccggagggatcggaccgggatcatggcgcggttaatgtatgtgggccgaac |
153 |
Q |
| |
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|||||| ||||| |||||||||| |||||| |||||| |||||||||||||||||||| |||||||||||||||| ||||||||| | |||||||| |
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| T |
24152326 |
gccgttggtgtctatggcaaggacggattggtggtggaaggtgtttttaccggagggatcaaaccgggatcatggcgccgttaatgtaagcgggccgaat |
24152425 |
T |
|
| Q |
154 |
gcggaggatttgtcgggtttggattatcctgatacgcttgtttttgttggtgggtttgatcctttgattgattggcaaaagaggtattatgattggttga |
253 |
Q |
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||||||||||| ||||||||||||| ||| || ||| |||||||| ||||||||||||||||||| | |||||||||||||||||||||| ||||||||| |
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| T |
24152426 |
gcggaggatttatcgggtttggattttccggagacgattgtttttattggtgggtttgatcctttaaatgattggcaaaagaggtattataattggttga |
24152525 |
T |
|
| Q |
254 |
agaaatgtgggaaaaaagctgagttgattgaatatccaaac |
294 |
Q |
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| T |
24152526 |
aaaaatgtggaaaaaaagctgagttgattgaatacccaaac |
24152566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 68 - 294
Target Start/End: Original strand, 24107927 - 24108153
Alignment:
| Q |
68 |
tggcaaggactgattggatgtggaaagtgtttttaccggagggatcggaccgggatcatggcgcggttaatgtatgtgggccgaacgcggaggatttgtc |
167 |
Q |
| |
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|||| ||||| |||||||||||||| |||||||| || ||||| ||| |||| ||||| ||| | |||||| |||||||||| ||||||||||| || |
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| T |
24107927 |
tggcgaggacagattggatgtggaaggtgtttttgccagagggttcgaaccgagatcacaacgcagctaatgttagtgggccgaatgcggaggatttatc |
24108026 |
T |
|
| Q |
168 |
gggtttggattatcctgatacgcttgtttttgttggtgggtttgatcctttgattgattggcaaaagaggtattatgattggttgaagaaatgtgggaaa |
267 |
Q |
| |
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| || |||||||| ||||||||||||||||| |||||||| || || |||||||||||||||||||||||| |||||||| | || ||| ||| |
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| T |
24108027 |
ccgattagattatccagatacgcttgtttttgtgggtgggttggacgggttatatgattggcaaaagaggtattatgaatggttgaaaatatctggaaaa |
24108126 |
T |
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| Q |
268 |
aaagctgagttgattgaatatccaaac |
294 |
Q |
| |
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|||||| |||||||||||||||||||| |
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| T |
24108127 |
aaagctcagttgattgaatatccaaac |
24108153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 253
Target Start/End: Original strand, 24214453 - 24214533
Alignment:
| Q |
173 |
tggattatcctgatacgcttgtttttgttggtgggtttgatcctttgattgattggcaaaagaggtattatgattggttga |
253 |
Q |
| |
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|||||||||| |||| || || | ||||||||||| ||| || || | ||||||||||||||||||||||| ||||||| |
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| T |
24214453 |
tggattatccgaatactctggtgtgtgttggtgggtgtgacccgttagtagattggcaaaagaggtattatgagtggttga |
24214533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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