View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6282_low_9 (Length: 251)
Name: NF6282_low_9
Description: NF6282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6282_low_9 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 9 - 251
Target Start/End: Complemental strand, 45464639 - 45464397
Alignment:
| Q |
9 |
agcagagataggtttgttcttgttctcagacttgacagtttcttttggaccaggcttcactctaatttctgggacagtgttctttgatattgaagataga |
108 |
Q |
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| T |
45464639 |
agcagagataggtttgttcttgttctcagacttgacaatttcttttggaccaggcttcactctaacttctgggacagtgttctttgatattgaagatgga |
45464540 |
T |
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| Q |
109 |
taccgttcatcaagttttttacggatctccttccactcatcaagcttcctacggctctctttccactcatcaagcttcttacgaatcaacttctgagcct |
208 |
Q |
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| T |
45464539 |
taccgttcatcaagttttttacggatctccttccactcatcaagcttcctacggctctctttccactcatcaagcttcttacgaatcaacttctgagcct |
45464440 |
T |
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| Q |
209 |
tttccgccaagatattcttcatttgctgctgagacatataact |
251 |
Q |
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| T |
45464439 |
tttccgccaagatattcttcatttgctgctgagacatataact |
45464397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 63 - 223
Target Start/End: Original strand, 25351040 - 25351200
Alignment:
| Q |
63 |
cttcactctaatttctgggacagtgttctttgatattgaagatagataccgttcatcaagttttttacggatctccttccactcatcaagcttcctacgg |
162 |
Q |
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| T |
25351040 |
cttcactctaacttctgcaacagtgttctttgatatagaagacatatatcattcatcaagttttttacggatctccttccattcatcgaaattcatacgg |
25351139 |
T |
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| Q |
163 |
ctctctttccactcatcaagcttcttacgaatcaacttctgagccttttccgccaagatat |
223 |
Q |
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| T |
25351140 |
ctctctttccactcatcaagcttcttaagaatttccttccgagccttttccgcaaagatat |
25351200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 63 - 195
Target Start/End: Complemental strand, 24919891 - 24919759
Alignment:
| Q |
63 |
cttcactctaatttctgggacagtgttctttgatattgaagatagataccgttcatcaagttttttacggatctccttccactcatcaagcttcctacgg |
162 |
Q |
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| T |
24919891 |
cttcactctaacttctgcaatagtgttctttgatatataagacatatatcgttcataaaacttattacggatctccttccactcatcaaaattcctacgg |
24919792 |
T |
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| Q |
163 |
ctctctttccactcatcaagcttcttacgaatc |
195 |
Q |
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| T |
24919791 |
ctctctttccactcatcaagcttcctacgaatc |
24919759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 64 - 195
Target Start/End: Original strand, 24919596 - 24919727
Alignment:
| Q |
64 |
ttcactctaatttctgggacagtgttctttgatattgaagatagataccgttcatcaagttttttacggatctccttccactcatcaagcttcctacggc |
163 |
Q |
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|||||||||| ||||| | ||||||||||||||| ||||| | ||| ||||||||| |||||||| ||||||||| ||||||||| |||||||||| |
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| T |
24919596 |
ttcactctaacttctgcaatagtgttctttgatatagaagacaaatattattcatcaagctttttacgaatctccttcaactcatcaaaattcctacggc |
24919695 |
T |
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| Q |
164 |
tctctttccactcatcaagcttcttacgaatc |
195 |
Q |
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| T |
24919696 |
tctctttcgactcatcaagcttcctacgaatc |
24919727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 84 - 182
Target Start/End: Complemental strand, 25351299 - 25351201
Alignment:
| Q |
84 |
agtgttctttgatattgaagatagataccgttcatcaagttttttacggatctccttccactcatcaagcttcctacggctctctttccactcatcaag |
182 |
Q |
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| T |
25351299 |
agtgttctttgatatagaagactgatattgttcatcaagctttttacggatctccttccactcatcgaaattcctacgactctctttccactcatcaag |
25351201 |
T |
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