View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6283_low_11 (Length: 237)
Name: NF6283_low_11
Description: NF6283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6283_low_11 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 42491577 - 42491354
Alignment:
| Q |
1 |
taaaaatgaattttctataattatagatataggatggtgtatgacttatatctctatgaactctagttttaagagtggtaaattaagatctaccaattta |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42491577 |
taaaaatgaattttctataataatagatataggagggtgtatgacttatatctccatgaactctagttttaagagtggtaaattaagatctaccaattta |
42491478 |
T |
|
| Q |
101 |
gcatttaactataatgtaataatt-ttttaacctagtttgatgaaaagaattaatagtgnnnnnnnnttacgactcaaatcacctatttatacaataaaa |
199 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
42491477 |
gcatttaactataatgtaataatttttttaacctagtttgatgaaaagaattaatagtgaaaaaaaatt-cgactcaaatcacctatttatacaataaaa |
42491379 |
T |
|
| Q |
200 |
aagcttatttattgtaaggaaaatg |
224 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
42491378 |
aagcttatttattgtaaggaaaatg |
42491354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University