View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6283_low_3 (Length: 400)
Name: NF6283_low_3
Description: NF6283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6283_low_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 285; Significance: 1e-160; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 6 - 390
Target Start/End: Complemental strand, 43212182 - 43211796
Alignment:
| Q |
6 |
atcttgatctcttaaaacacatgtttgaagtttaattgcataataggcaaaatgccaaattttgaggcttctgtttcttacatttgcataaatgtaaact |
105 |
Q |
| |
|
||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43212182 |
atcttgatcccttaaaacacatgtctgacgtttaattgcataataggcaaaatgccaaattttgaggcttctgtttcttacatttgcataaatgtaaact |
43212083 |
T |
|
| Q |
106 |
aatgccaaatttcgagttttcactatgtcaactttgcatgttacggtcattctatcatatgacatgccacaaaattcattgaaacataactcaatgcatc |
205 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| |||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
43212082 |
aatgccaaatttcgagttttcactatttcaactttgcgtgttacagtcattctatcatatggcatgccacgaaattcattgaaacataactcaatgcatc |
43211983 |
T |
|
| Q |
206 |
aattattattattaattgtaacaaacacataatcaagaaaatttgaggg--nnnnnnnnnnnnnnnnncctggccattatattatctactattccaagat |
303 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
43211982 |
aattattattattaattgtaacaaacacataatcaagaaaatttgagggaaaaaagaaaaaaaaaaaacctggccattgtattatctactattccaagat |
43211883 |
T |
|
| Q |
304 |
gtctcctgcttctgcatattatattttctttcttgctgagtttcttgttctaaagtattcgtccttttatggatccgtgatctcatt |
390 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
43211882 |
gtctcctgcttctgcatattatattttctttcttgctgagtttcttgttctaaagtattcgtccttttatggatccgtgacctcatt |
43211796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 184 - 234
Target Start/End: Complemental strand, 43226648 - 43226599
Alignment:
| Q |
184 |
ttgaaacataactcaatgcatcaattattattattaattgtaacaaacaca |
234 |
Q |
| |
|
||||| ||||||||||||||||||||||| || ||||||||||||||||| |
|
|
| T |
43226648 |
ttgaagcataactcaatgcatcaattattgtt-gtaattgtaacaaacaca |
43226599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 101 - 234
Target Start/End: Complemental strand, 25929002 - 25928870
Alignment:
| Q |
101 |
aaactaatgccaaatttcgagttttcactatgtcaactttgcatgttacggtcattctatcatatgacatgccacaaaattcattgaaacataactcaat |
200 |
Q |
| |
|
||||| ||||||||||| |||| || | || ||| |||| ||||||| || |||| |||||||| ||| |||| || | ||||||||||||| ||| |
|
|
| T |
25929002 |
aaactgatgccaaattttgagtgctctttgtgccaattttgtatgttacagttattcaatcatatggcataccacttaaccctttgaaacataacttaat |
25928903 |
T |
|
| Q |
201 |
gcatcaattattattattaattgtaacaaacaca |
234 |
Q |
| |
|
|||||||||||| || ||||||||||||||||| |
|
|
| T |
25928902 |
gcatcaattattgtt-gtaattgtaacaaacaca |
25928870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University