View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6284_high_2 (Length: 565)
Name: NF6284_high_2
Description: NF6284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6284_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 493; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 1 - 546
Target Start/End: Complemental strand, 35410395 - 35409851
Alignment:
| Q |
1 |
acactcaagacaaatgcaacagcccgcgaggtactcgttaatgcagacggttccatagagaaaaactacactcccgggagatactgtatgcaaattacgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35410395 |
acactcaagacaaatgcaacagcccgcgaggtactcgttaatgcagacggttccatagagaaaaactacactcccgggagatactgtatgcaaattacgt |
35410296 |
T |
|
| Q |
101 |
gtgctgcctataaagattggtggcgatttgacatggaaggtcttcctgccgatcttaaaagaaggtaaagaagatagtttccttcatcaaagttttctgt |
200 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35410295 |
gtgctgcctataaagattggtggcggtttgacatggaaggtcttcctgccgatcttaaaagaaggtaaagaagatagtttccttcatcaaagttttctgc |
35410196 |
T |
|
| Q |
201 |
gcaatgagcttggttttacttgttctttcatttgttctttcactaagtgaagaagataagatctaactatttattctttcnnnnnnnncagaggtttggc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
35410195 |
tcaatgagcttggttttacttgttctttcatttgttctttcactaagtgaagaagataagatctaactatttattctttc-tttttttcagaggtttggc |
35410097 |
T |
|
| Q |
301 |
ggttccagatgccactcagccacatggcattagactacttattgaagattatccttatgcggctgatggactcctcatatggactagtatagagaagttg |
400 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
35410096 |
ggttccagatgccactcggccacatggcattagactacttattgaagattatccttatgcggctgatggactcctcatatggtctagtatagagaagttg |
35409997 |
T |
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| Q |
401 |
gtcaggacctatgtgaaccattactacaaagatttgaatgccgtttcttctgacaatgaactccagtcctggtacaaagaattcatcaacatggggcacc |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35409996 |
gtcaggacctatgtgaaccattactacaaagatttgaatgccatttcttctgacaatgaactccagtcctggtacaaagaattcatcaacatggggcacc |
35409897 |
T |
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| Q |
501 |
ctgatcataaaaatgctacctggtggcctaaactaaacacccctga |
546 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35409896 |
ctgatcataaaaatgctacctggtggcctaaactaaacacccctga |
35409851 |
T |
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