View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6284_high_5 (Length: 251)
Name: NF6284_high_5
Description: NF6284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6284_high_5 |
 | |
|
| [»] chr2 (3 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 11 - 251
Target Start/End: Complemental strand, 18726511 - 18726273
Alignment:
| Q |
11 |
cagagaaagtctaatgaagctgaagttgaatctttgcgacagaaggtttcaactcttgaaagaaaggtatcactggtcataaatcttatctttcctgttc |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
18726511 |
cagagaaagtctaatgaagctgaagttgaatctttgcgacagaaggtttcaactcttgaaagaaaggtatcactggtcataaatcttatgtttcctgttc |
18726412 |
T |
|
| Q |
111 |
ttaatcaacaaagttttcaataatgctgccatagaaaacaaaattactgtcacaaatgacagaagtctcaagtgtatatttttaactaaaacttttttga |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
18726411 |
ttaatcaacaaagttttcaataatgctgccatagaaaacaagattactgtcacaaatgacagaagtctcaagggtatatttttaactaaaac--ttttga |
18726314 |
T |
|
| Q |
211 |
gactccatgaattgtgtttaattgcaggttgatgctctcac |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18726313 |
gactccatgaattgtgtttaattgcaggttgatgctctcac |
18726273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 7 - 135
Target Start/End: Complemental strand, 43751840 - 43751700
Alignment:
| Q |
7 |
ggagcagagaaagtctaatgaagctgaagttgaatctttgcga------------cagaaggtttcaactcttgaaagaaaggtatcactggtcataaat |
94 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| ||||||||| |||| |||||||||||| || |||||||||||| | ||||||||| |
|
|
| T |
43751840 |
ggagcagagaaagtccaatgaagctgaagttgagtctttgcgagaggaataccatcagagggtttcaactctagagagaaaggtatcatttgtcataaat |
43751741 |
T |
|
| Q |
95 |
cttatctttcctgttcttaatcaacaaagttttcaataatg |
135 |
Q |
| |
|
||||| |||||||| |||| ||||||||||||||||||||| |
|
|
| T |
43751740 |
cttatgtttcctgtccttattcaacaaagttttcaataatg |
43751700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 251
Target Start/End: Complemental strand, 43751413 - 43751344
Alignment:
| Q |
184 |
gtatatttttaactaaaacttttttgagactccatgaa--ttgtgtttaattgcaggttgatgctctcac |
251 |
Q |
| |
|
||||| |||||||||||||| || |||||||||||| | |||| |||||||| ||||| |||||||||| |
|
|
| T |
43751413 |
gtatacttttaactaaaactgttatgagactccatgcattttgtatttaattgtaggtttatgctctcac |
43751344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University