View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6284_low_1 (Length: 667)
Name: NF6284_low_1
Description: NF6284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6284_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 590; Significance: 0; HSPs: 29)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 590; E-Value: 0
Query Start/End: Original strand, 18 - 639
Target Start/End: Original strand, 27508118 - 27508739
Alignment:
| Q |
18 |
agatttgtgttggttcgaaatgtttagcagtcatgaatatatatagctgaaaggatacataacaagtcgtcggaaattgtaataatcaatgaaggagggc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27508118 |
agatttgtgttggttcgaaatgtttagcagtcatgaatatatatagctgaaaggatacataacaagtcgtcggaaattgtaataatcaatgaaggagggc |
27508217 |
T |
|
| Q |
118 |
cataagatatgagtcatgcccagacaagggcgtatgaaagatcacatggagttgtcttagagacttcaagggttatggtagctagataatgcataattct |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
27508218 |
cataagatatgagtcatgcccagacaagggcatatgaaagatcacatggagttgtcttagagacttcaagcgttatggtagctagataatgcataattct |
27508317 |
T |
|
| Q |
218 |
tgagaagaagcatcatataattgatagacttgtaagtagaaccacaaacatgtagaatggtttctgttgatctattgttatctatggccttatagtcact |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27508318 |
tgagaagaagcatcatataattgatagacttgtaagtagaaccacaaacatgtagaatggtttctgttgatctattgttatctatggccttatagtcact |
27508417 |
T |
|
| Q |
318 |
taccagctggacatcagcattgtcataatgaagaaaacatgtcttcagcatgtttacaaaattatgaaggacatctcatttggtaggaagtggaagcttt |
417 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27508418 |
tactagctggacatcagcattgtcataatgaagaaaacatgtcttcagcatgtttataaaattatgaaggacatctcatttggtaggaagtggaagcttt |
27508517 |
T |
|
| Q |
418 |
gtattggacattgtgtaagaaggtagggtacactctaagacaacaccacatgctaccttatcactatgctctctatccttccaccccttcaataatagtt |
517 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27508518 |
gtattggacattgtttaagaaggtagggtacactctaagacagcaccacatgctaccttatcactatgctctctatccttccaccccttcaataatagtt |
27508617 |
T |
|
| Q |
518 |
tttctaggaattgggttttgagataacttcaaactctataaatacacttcatctctccttcacaaacagcacaactcattagcttcatcaattacttagt |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
27508618 |
tttctaggaattgggttttgagataacttcaaactctataaatacacttcctctctccttcacaaacagcacaactcattagcatcatcaattacttagt |
27508717 |
T |
|
| Q |
618 |
tacatccttcttacttttgata |
639 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
27508718 |
tacatccttcttacttttgata |
27508739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 388 - 638
Target Start/End: Original strand, 27503544 - 27503794
Alignment:
| Q |
388 |
acatctcatttggtaggaagtggaagctttgtattggacattgtgtaagaa-ggtagggtacactctaagacaacaccacatgctaccttatcactatgc |
486 |
Q |
| |
|
|||||| |||| ||| ||||||||||||||||||||||||||| || ||| ||||||| ||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
27503544 |
acatcttattttttagcaagtggaagctttgtattggacattgtttaggaaaggtaggggacactctaagacaacaccacatgctacattatccctatga |
27503643 |
T |
|
| Q |
487 |
tctctatccttccaccccttcaataatagtttttctaggaattgggttttgagataacttcaaactctataaatacacttcatctctccttcacaaacag |
586 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
27503644 |
tctctatccttccaccccttcaataatagtttttctaggaattgggttttgagataacttcaaactctataaatacacttcctctctccttcacaaacag |
27503743 |
T |
|
| Q |
587 |
cacaactcattagcttcatcaattacttagttacatccttcttacttttgat |
638 |
Q |
| |
|
||||| ||||| || ||||||| |||||| |||||||| |||||| |||||| |
|
|
| T |
27503744 |
cacaattcatt-gcatcatcaaatacttaattacatccatcttacatttgat |
27503794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 102 - 386
Target Start/End: Complemental strand, 27469194 - 27468899
Alignment:
| Q |
102 |
atcaatgaaggagggccataagatatgagtcatgcccagacaagggcgtatgaaagatcacatggagttgtctt-----------agagacttcaagggt |
190 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| ||||||||| || ||||||||||||||||| ||||||| | | ||||||| | |
|
|
| T |
27469194 |
atcaatgaaggagggccatgagatatgagtcatggccagacaagagcatatgaaagatcacatggtgttgtctctaaatgaatggatatacttcaaatgg |
27469095 |
T |
|
| Q |
191 |
tatggtagctagataatgcataattcttgagaagaagcatcatataattgatagacttgtaagtagaaccacaaacatgtagaatggtttctgttgatct |
290 |
Q |
| |
|
| | |||| |||||||||||||||||||||| ||||||||||||| || |||||||||| ||||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
27469094 |
tgtagtagatagataatgcataattcttgagtagaagcatcatatgatagatagacttgaaagtagaaccacagacatgtagaatggtttgagttgatct |
27468995 |
T |
|
| Q |
291 |
attgttatctatggccttatagtcacttaccagctggacatcagcattgtcataatgaagaaaacatgtcttcagcatgtttacaaaattatgaag |
386 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
27468994 |
attgttatccatggccttatagtcacttaccagcttcacatcggcattatcataatgaagaaaacatgtctgaagcatgtttacaaaattatgaag |
27468899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 138; E-Value: 8e-72
Query Start/End: Original strand, 53 - 386
Target Start/End: Original strand, 27514127 - 27514471
Alignment:
| Q |
53 |
aatatatatagctgaaaggatacataacaagtcgtcggaaattgtaataatcaatgaaggagggccataagatatgagtcatgcccagacaagggcgtat |
152 |
Q |
| |
|
||||||||||| |||||||||| |||||| ||||| | | ||| ||||||||||||||||||| || | |||| ||| ||||||||| || ||| |
|
|
| T |
27514127 |
aatatatatagatgaaaggatatgtaacaaacagtcggcagctacaatgatcaatgaaggagggccatgaggtttgagctatggccagacaagagcatat |
27514226 |
T |
|
| Q |
153 |
gaaagatcacatggagttgtct-tagag----------acttcaagggttatggtagctagataatgcataattcttgagaagaagcatcatataattga |
241 |
Q |
| |
|
|||||||||||||| ||||||| |||| |||||||| ||| | |||| |||||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
27514227 |
gaaagatcacatggtgttgtctctagatgaatggataaacttcaagtgttgtagtagatagataatgcataattcttgagcataagcatcatataattga |
27514326 |
T |
|
| Q |
242 |
tagacttgtaagtagaaccacaaacatgtagaatggtttctgttgatctattgttatctatggccttatagtcacttaccagctggacatcagcattgtc |
341 |
Q |
| |
|
|||||||| ||||| | |||||||||| ||||||||||| ||||| | |||||||||||||||| |||||||||||||| ||||||||||||||||| || |
|
|
| T |
27514327 |
tagacttgaaagtaaagccacaaacatatagaatggtttatgttgttatattgttatctatggcattatagtcacttactagctggacatcagcattatc |
27514426 |
T |
|
| Q |
342 |
ataatgaagaaaacatgtcttcagcatgtttacaaaattatgaag |
386 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
27514427 |
ataatgcagaaaacatgtctaaagcatgtttacaaaattatgaag |
27514471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 138; E-Value: 8e-72
Query Start/End: Original strand, 388 - 637
Target Start/End: Original strand, 27524146 - 27524394
Alignment:
| Q |
388 |
acatctcatttggtaggaagtggaagctttgtattggacattgtgtaagaaggtagggtacactctaagacaacaccacatgctaccttatcactatgct |
487 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |
|
|
| T |
27524146 |
acatctcatttggtagcaattggaagctttgtattggatattgtttaagaaggtagggtacactctaagacaacaccacatgctaccttatccctatgat |
27524245 |
T |
|
| Q |
488 |
ctctatccttccaccccttcaataatagtttttctaggaattgggttttgagataacttcaaactctataaatacacttcatctctccttcacaaacagc |
587 |
Q |
| |
|
|| |||||||| ||||||||||||||||||||||| | |||| || ||||||| ||||| ||| |||||| ||| ||||| |||||||||||||||||| |
|
|
| T |
27524246 |
ctatatccttcaaccccttcaataatagtttttcttgaaatttgggtttgagagaactttaaaatctatatataaacttcctctctccttcacaaacaga |
27524345 |
T |
|
| Q |
588 |
acaactcattagcttcatcaattacttagttacatccttcttacttttga |
637 |
Q |
| |
|
| |||||||| || | ||||| || ||||||||||||||| ||| ||||| |
|
|
| T |
27524346 |
aaaactcatt-gcattatcaaatatttagttacatccttcatacatttga |
27524394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 388 - 618
Target Start/End: Complemental strand, 27468855 - 27468624
Alignment:
| Q |
388 |
acatctcatttggtaggaagtggaagctttgtattggacatt-gtgtaagaaggtagggtacactctaagacaacaccacatgctaccttatcactatgc |
486 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||||||||| |||||||| |||||| |
|
|
| T |
27468855 |
acatctcatttggtagcaagtggaagctttgtattggacatttgtttaagaaggtagggtacactcttagacaacaccacatgagaccttatccctatgc |
27468756 |
T |
|
| Q |
487 |
tctctatccttccaccccttcaataatagtttttctaggaattgggttttgagataacttcaaactctataaatacacttcatctctccttcacaaacag |
586 |
Q |
| |
|
||||||||| || | ||||||||||||||||||| | | |||| | |||||||| ||||||||| |||||||||||||||| |||| ||||||||||||| |
|
|
| T |
27468755 |
tctctatccatcaaacccttcaataatagtttttgttgaaatttgattttgagagaacttcaaaatctataaatacacttcctctcgccttcacaaacag |
27468656 |
T |
|
| Q |
587 |
cacaactcattagcttcatcaattacttagtt |
618 |
Q |
| |
|
|||||||||| || ||||||| || |||||| |
|
|
| T |
27468655 |
gacaactcattggcatcatcaaatatttagtt |
27468624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 388 - 622
Target Start/End: Complemental strand, 27476088 - 27475853
Alignment:
| Q |
388 |
acatctcatttggtaggaagtggaagctttgtattggacattgtgtaagaa-ggtagggtacactctaagacaacaccacatgctaccttatcactatgc |
486 |
Q |
| |
|
|||||| |||| ||| ||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||||| |||||||||||||| || ||| |
|
|
| T |
27476088 |
acatcttattttttagcaagtggaagctttgtattggacattgtttaggaaaggtagggtacactctaagacaacaccccatgctaccttatccctgtgc |
27475989 |
T |
|
| Q |
487 |
tctctatccttccaccccttcaataatagtttttctaggaattgggttttgagataacttcaaactctataaatacacttcatctctccttcacaaacag |
586 |
Q |
| |
|
||||||||| || | ||||||||||||||||| ||| | |||| |||||||||| ||||||||| |||||||||||||||| ||||||||||| |||||| |
|
|
| T |
27475988 |
tctctatccatcaaacccttcaataatagtttctcttgaaatttggttttgagagaacttcaaaatctataaatacacttcctctctccttcataaacag |
27475889 |
T |
|
| Q |
587 |
cacaactcattagcttcatcaattacttagttacat |
622 |
Q |
| |
|
||||||| ||| || ||||||| || |||||||||| |
|
|
| T |
27475888 |
cacaactgattggcatcatcaaatatttagttacat |
27475853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 387 - 619
Target Start/End: Original strand, 27514505 - 27514736
Alignment:
| Q |
387 |
gacatctcatttggtaggaagtggaagctttgtattggacatt-gtgtaagaaggtagggtacactctaagacaacaccacatgctaccttatcactatg |
485 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||||||||| |||||||| ||||| |
|
|
| T |
27514505 |
gacatctcatttggtagcaagtggaagctttgtattggacatttgtttaagaaggtagggtacactcttagacaacaccacatgagaccttatccctatg |
27514604 |
T |
|
| Q |
486 |
ctctctatccttccaccccttcaataatagtttttctaggaattgggttttgagataacttcaaactctataaatacacttcatctctccttcacaaaca |
585 |
Q |
| |
|
|||||||||| || | ||||||||||||||||| ||| | |||| |||| ||||| ||||||||| |||||||||||||||| ||||||||||| || | |
|
|
| T |
27514605 |
ctctctatccatcaaacccttcaataatagtttctcttgaaatttggttctgagagaacttcaaaatctataaatacacttcctctctccttcataa--a |
27514702 |
T |
|
| Q |
586 |
gcacaactcattagcttcatcaattacttagtta |
619 |
Q |
| |
|
|||||||||||| || ||||||| || ||||||| |
|
|
| T |
27514703 |
gcacaactcattggcatcatcaagtatttagtta |
27514736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 195 - 382
Target Start/End: Complemental strand, 27476320 - 27476133
Alignment:
| Q |
195 |
gtagctagataatgcataattcttgagaagaagcatcatataattgatagacttgtaagtagaaccacaaacatgtagaatggtttctgttgatctattg |
294 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
27476320 |
gtagatagataatgcataattcttgagcagaagcatcatataattgatagacttgaaagtacaaccacagacatgtagaatggtttatgttgatctattg |
27476221 |
T |
|
| Q |
295 |
ttatctatggccttatagtcacttaccagctggacatcagcattgtcataatgaagaaaacatgtcttcagcatgtttacaaaattat |
382 |
Q |
| |
|
||||| ||| ||||| |||||| |||||||| ||||| ||||| |||||||||||||||||||||| |||||| |||||||||||| |
|
|
| T |
27476220 |
ttatccatgtccttagagtcacataccagcttcacatcggcattatcataatgaagaaaacatgtctgaagcatgcttacaaaattat |
27476133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 195 - 388
Target Start/End: Original strand, 27523910 - 27524104
Alignment:
| Q |
195 |
gtagctagataatgcataattcttgagaagaagcatcatataattgatagacttgtaagtagaa-ccacaaacatgtagaatggtttctgttgatctatt |
293 |
Q |
| |
|
|||| |||||||||||||||||||| | | ||||||||||||||||||||||||| ||||| || ||||| |||||||||||||||| |||||||| ||| |
|
|
| T |
27523910 |
gtagatagataatgcataattcttgtgcaaaagcatcatataattgatagacttgaaagtacaaaccacagacatgtagaatggtttatgttgatcaatt |
27524009 |
T |
|
| Q |
294 |
gttatctatggccttatagtcacttaccagctggacatcagcattgtcataatgaagaaaacatgtcttcagcatgtttacaaaattatgaagga |
388 |
Q |
| |
|
|||||| || ||| | ||| ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
27524010 |
gttatccatagccatgtagacacttaccagctggacatcagcattatcataatgaagaaaacatgtctgaagcatgtttacgaaattatgaagga |
27524104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 50 - 381
Target Start/End: Original strand, 27489342 - 27489684
Alignment:
| Q |
50 |
atgaatatatatagctgaaaggatacataacaagtcgtcggaaattgtaataatcaatgaaggagggccataagatatgagtcatgcccagacaagggcg |
149 |
Q |
| |
|
||||||||||||| |||||||||| |||||| | |||| || || ||| |||| ||||||||||||||||||| ||||||||| |||||||| || |
|
|
| T |
27489342 |
atgaatatatatacatgaaaggataagtaacaaaccatcggcaaatgaaattatcagtgaaggagggccataagatttgagtcatgttcagacaagagca |
27489441 |
T |
|
| Q |
150 |
tatgaaagatcacatggagttgtctt-----------agagacttcaagggttatggtagctagataatgcataattcttgagaagaagcatcatataat |
238 |
Q |
| |
|
||||||||||||||||| ||||||| | | ||||||| | | | |||| |||||||||||||||||||| | |||||||||||||||| |
|
|
| T |
27489442 |
tatgaaagatcacatggtgttgtctcgaaatgaatggatatacttcaaatggtgtagtagatagataatgcataattcttgtgcagaagcatcatataat |
27489541 |
T |
|
| Q |
239 |
tgatagacttgtaagtagaaccacaaacatgtagaatggtttctgttgatctattgttatctatggccttatagtcacttaccagctggacatcagcatt |
338 |
Q |
| |
|
||||||||||| ||||| ||||||| ||||||||||||| | || ||||| || |||| || |||||||| ||||| |||||||||||||| |||| |
|
|
| T |
27489542 |
tgatagacttgaaagtacaaccacagacatgtagaatggcctatgatgatccataattatacattgccttataatcactaaccagctggacatcgacatt |
27489641 |
T |
|
| Q |
339 |
gtcataatgaagaaaacatgtcttcagcatgtttacaaaatta |
381 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
27489642 |
ttcataatgaagaaaacatgtctaaagcatgtttacaaaatta |
27489684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 19 - 182
Target Start/End: Original strand, 27503111 - 27503280
Alignment:
| Q |
19 |
gatttgtgttggttcgaaatgtttagcagtcatgaatatatata------gctgaaaggatacataacaagtcgtcggaaattgtaataatcaatgaagg |
112 |
Q |
| |
|
|||| ||||| ||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||| |||| ||||||||| |||| |||| | |
|
|
| T |
27503111 |
gattcgtgtttgttcgaaatgttttgcagtcatgaatatatatatatatagatgaaaggatacataacaagtcttcggcaattgtaatgatcattgaatg |
27503210 |
T |
|
| Q |
113 |
agggccataagatatgagtcatgcccagacaagggcgtatgaaagatcacatggagttgtcttagagact |
182 |
Q |
| |
|
|||||||||||| |||| ||||| |||||||||||| ||||||||||||||||| |||||||| |||||| |
|
|
| T |
27503211 |
agggccataagaaatgattcatggccagacaagggcatatgaaagatcacatggtgttgtcttcgagact |
27503280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 264 - 384
Target Start/End: Complemental strand, 27557082 - 27556962
Alignment:
| Q |
264 |
aacatgtagaatggtttctgttgatctattgttatctatggccttatagtcacttaccagctggacatcagcattgtcataatgaagaaaacatgtcttc |
363 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| || || ||||| |||||||||||||||| |||| || | |||||||||||||||||||||| |
|
|
| T |
27557082 |
aacatgtagaatggtttatgttgatctattgttatccattgcgttataatcacttaccagctggaaatcaacactatcataatgaagaaaacatgtctaa |
27556983 |
T |
|
| Q |
364 |
agcatgtttacaaaattatga |
384 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
27556982 |
agcatgtttacaaaattatga |
27556962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 282 - 382
Target Start/End: Original strand, 27503399 - 27503499
Alignment:
| Q |
282 |
tgttgatctattgttatctatggccttatagtcacttaccagctggacatcagcattgtcataatgaagaaaacatgtcttcagcatgtttacaaaatta |
381 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||||| ||||||||||||| |||| |||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
27503399 |
tgttgatctattgttatccattgccttatagtcacttatcagctggacatcaacattatcataatgaagaaaacatgtctgaagcatgtttacaaaatta |
27503498 |
T |
|
| Q |
382 |
t |
382 |
Q |
| |
|
| |
|
|
| T |
27503499 |
t |
27503499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 261 - 377
Target Start/End: Complemental strand, 27497975 - 27497858
Alignment:
| Q |
261 |
acaaacatgtagaatggtttctgttgatctattgttatctatggccttatag-tcacttaccagctggacatcagcattgtcataatgaagaaaacatgt |
359 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||| | |||||||| ||||||||||||| ||||||| |||| |||||||||||||||||||| |
|
|
| T |
27497975 |
acaaacatgtagaatggtttatgttgatctattgttatccactgccttatatctcacttaccagctagacatcaacattatcataatgaagaaaacatgt |
27497876 |
T |
|
| Q |
360 |
cttcagcatgtttacaaa |
377 |
Q |
| |
|
| | ||| |||||||||| |
|
|
| T |
27497875 |
cctaagcctgtttacaaa |
27497858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 19 - 176
Target Start/End: Complemental strand, 27466638 - 27466482
Alignment:
| Q |
19 |
gatttgtgttggttcgaaatgtttagcagtcatgaatatatatagctgaaaggatacataacaagtcgtcggaaattgtaataatcaatgaaggagggcc |
118 |
Q |
| |
|
||||||||||||| | ||| | || |||| ||||||||||||||| ||||||||||| |||||| ||||||| || | |||| ||| |||| ||||||| |
|
|
| T |
27466638 |
gatttgtgttggtgctaaaggctt-gcagccatgaatatatatagatgaaaggatacttaacaaatcgtcggcaactataatgctcagtgaatgagggcc |
27466540 |
T |
|
| Q |
119 |
ataagatatgagtcatgcccagacaagggcgtatgaaagatcacatggagttgtctta |
176 |
Q |
| |
|
||||||| ||||||||| |||||||| || ||||||| ||||||||| ||||||||| |
|
|
| T |
27466539 |
ataagatttgagtcatggtcagacaagagcatatgaaacatcacatggtgttgtctta |
27466482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 44 - 175
Target Start/End: Complemental strand, 27473687 - 27473556
Alignment:
| Q |
44 |
gcagtcatgaatatatatagctgaaaggatacataacaagtcgtcggaaattgtaataatcaatgaaggagggccataagatatgagtcatgcccagaca |
143 |
Q |
| |
|
|||| ||||||||||||||| ||||||||||| || ||| | |||| || | |||| |||| |||| ||||||||||| || ||||||||| |||||| |
|
|
| T |
27473687 |
gcagccatgaatatatatagatgaaaggatacttagcaaaccatcggcaactataatgatcagtgaatgagggccataatatttgagtcatgttcagaca |
27473588 |
T |
|
| Q |
144 |
agggcgtatgaaagatcacatggagttgtctt |
175 |
Q |
| |
|
|| || ||||||| ||||||||| |||||||| |
|
|
| T |
27473587 |
agagcatatgaaacatcacatggtgttgtctt |
27473556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #18
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 44 - 175
Target Start/End: Original strand, 27526457 - 27526588
Alignment:
| Q |
44 |
gcagtcatgaatatatatagctgaaaggatacataacaagtcgtcggaaattgtaataatcaatgaaggagggccataagatatgagtcatgcccagaca |
143 |
Q |
| |
|
|||| ||||||||||||||| |||||||||| |||||| ||||| || | || | |||| ||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
27526457 |
gcagccatgaatatatatagatgaaaggatatgtaacaaacagtcggcaactatagtgatcagtgaaggagggccataagatttgagtcatggttagaca |
27526556 |
T |
|
| Q |
144 |
agggcgtatgaaagatcacatggagttgtctt |
175 |
Q |
| |
|
|| || |||||| |||||||||| |||||||| |
|
|
| T |
27526557 |
agagcatatgaatgatcacatggtgttgtctt |
27526588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 322 - 386
Target Start/End: Original strand, 27506260 - 27506324
Alignment:
| Q |
322 |
agctggacatcagcattgtcataatgaagaaaacatgtcttcagcatgtttacaaaattatgaag |
386 |
Q |
| |
|
||||||||||||||| | | |||||||||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
27506260 |
agctggacatcagcactttgataatgaagaaaacatgtctgaaacatgtttacaaaattatgaag |
27506324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #20
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 19 - 175
Target Start/End: Original strand, 27516925 - 27517080
Alignment:
| Q |
19 |
gatttgtgttggttcgaaatgtttagcagtcatgaatatatatagctgaaaggatacataacaagtcgtcggaaattgtaataatcaatgaaggagggcc |
118 |
Q |
| |
|
||||||||||||| | ||||| || |||| ||||||||||||||| |||| |||||| |||||| |||||| || | |||| |||| ||||||||| || |
|
|
| T |
27516925 |
gatttgtgttggtgctaaatgctt-gcagccatgaatatatatagatgaacggatacttaacaaaccgtcggcaactataatgatcagtgaaggaggacc |
27517023 |
T |
|
| Q |
119 |
ataagatatgagtcatgcccagacaagggcgtatgaaagatcacatggagttgtctt |
175 |
Q |
| |
|
||| ||| |||| ||| ||||||| || ||||||| |||||||| |||||||| |
|
|
| T |
27517024 |
ataggattagagttatgttcagacaacagcatatgaaacgtcacatggtgttgtctt |
27517080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 44 - 174
Target Start/End: Complemental strand, 27476482 - 27476352
Alignment:
| Q |
44 |
gcagtcatgaatatatatagctgaaaggatacataacaagtcgtcggaaattgtaataatcaatgaaggagggccataagatatgagtcatgcccagaca |
143 |
Q |
| |
|
||||||| ||||||||||| |||||||||| |||||| ||||| || | ||| |||||| ||||||| |||| ||| | || |||| ||||||| |
|
|
| T |
27476482 |
gcagtcaataatatatatagatgaaaggatatttaacaaacagtcggcaactacaatgatcaattaaggaggaccattagaatttagccatggccagaca |
27476383 |
T |
|
| Q |
144 |
agggcgtatgaaagatcacatggagttgtct |
174 |
Q |
| |
|
|| || ||||||||||||||||| ||||||| |
|
|
| T |
27476382 |
agagcatatgaaagatcacatggtgttgtct |
27476352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 405 - 497
Target Start/End: Original strand, 27517383 - 27517475
Alignment:
| Q |
405 |
aagtggaagctttgtattggacattgtgtaagaaggtagggtacactc-taagacaacaccacatgctaccttatcactatgctctctatcctt |
497 |
Q |
| |
|
||||||||||||||| |||| |||||| | ||||||| ||||||| || ||||||||| |||||||||| ||||| ||||||||||| |||| |
|
|
| T |
27517383 |
aagtggaagctttgtgttggccattgtttgagaaggtggggtacaatcttaagacaacgccacatgctatattatc-ttatgctctctaacctt |
27517475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 322 - 386
Target Start/End: Complemental strand, 27479464 - 27479400
Alignment:
| Q |
322 |
agctggacatcagcattgtcataatgaagaaaacatgtcttcagcatgtttacaaaattatgaag |
386 |
Q |
| |
|
||||||||||||||| | |||||||||||||||||||| | |||||||||| |||||||||| |
|
|
| T |
27479464 |
agctggacatcagcaccatgataatgaagaaaacatgtctgaaacatgtttacacaattatgaag |
27479400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 174
Target Start/End: Original strand, 27523807 - 27523878
Alignment:
| Q |
103 |
tcaatgaaggagggccataagatatgagtcatgcccagacaagggcgtatgaaagatcacatggagttgtct |
174 |
Q |
| |
|
||||||||||||| |||| ||| | | ||||| ||||||||| || ||||||||||||||||| ||||||| |
|
|
| T |
27523807 |
tcaatgaaggaggaccatgagaatttaatcatggccagacaagagcatatgaaagatcacatggtgttgtct |
27523878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 315 - 386
Target Start/End: Complemental strand, 27554174 - 27554104
Alignment:
| Q |
315 |
acttaccagctggacatcagcattgtcataatgaagaaaacatgtcttcagcatgtttacaaaattatgaag |
386 |
Q |
| |
|
|||||||||||||| |||| |||| ||| ||||||| ||||||||||| ||||||| ||||||||||||| |
|
|
| T |
27554174 |
acttaccagctggagatcaacattatcaaaatgaag-aaacatgtcttagacatgtttgcaaaattatgaag |
27554104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 49 - 135
Target Start/End: Original strand, 27500681 - 27500767
Alignment:
| Q |
49 |
catgaatatatatagctgaaaggatacataacaagtcgtcggaaattgtaataatcaatgaaggagggccataagatatgagtcatg |
135 |
Q |
| |
|
|||| |||||||||| ||||||||||| |||||| |||||| || | |||| |||| ||||||||| ||||| ||| |||||||| |
|
|
| T |
27500681 |
catggatatatatagatgaaaggatacttaacaaaccgtcggcaactataatgatcagtgaaggaggaccataggattagagtcatg |
27500767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 231 - 308
Target Start/End: Original strand, 27517168 - 27517243
Alignment:
| Q |
231 |
catataattgatagacttgtaagtagaaccacaaacatgtagaatggtttctgttgatctattgttatctatggcctt |
308 |
Q |
| |
|
||||||||| || ||||| ||||| ||||||||||||||||| |||||| || ||||||||| ||||||| ||||| |
|
|
| T |
27517168 |
catataattaatcaacttgaaagtataaccacaaacatgtagagtggtttatg--gatctattgctatctattgcctt |
27517243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 386
Target Start/End: Complemental strand, 27486521 - 27486460
Alignment:
| Q |
325 |
tggacatcagcattgtcataatgaagaaaacatgtcttcagcatgtttacaaaattatgaag |
386 |
Q |
| |
|
||||||||| || | | |||||||||||||||||||| | |||||||||| |||||||||| |
|
|
| T |
27486521 |
tggacatcaacactttaataatgaagaaaacatgtctgaaacatgtttacacaattatgaag |
27486460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 27570381 - 27570424
Alignment:
| Q |
19 |
gatttgtgttggttcgaaatgtttagcagtcatgaatatatatag |
63 |
Q |
| |
|
||||||||||||||| ||||| || |||||||||||||||||||| |
|
|
| T |
27570381 |
gatttgtgttggttctaaatgctt-gcagtcatgaatatatatag |
27570424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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