View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6284_low_3 (Length: 372)
Name: NF6284_low_3
Description: NF6284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6284_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 17 - 248
Target Start/End: Complemental strand, 489111 - 488880
Alignment:
| Q |
17 |
aaacatactaaactctcgagtcccaaacacatgtcaaaggtttgaatacaggttcctatgaatacagcgacagtatcaacaccaagttggtggtgttgca |
116 |
Q |
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| T |
489111 |
aaacatagtaaactctcgagtcccaaacacatgtcaaaggtttgaatacaggttcctatgaatacagcgacagtatcaacaccaagttggtggtgttgca |
489012 |
T |
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| Q |
117 |
ttcagacccaccatcaacatcattcacctcctcatttctttccccgcccaatacacccacagttcaaaggtaagtaaatgtcttataaaccatcccaaaa |
216 |
Q |
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| T |
489011 |
ttcagacccaccatcaacatcattcacctcctcatttctttccccgcccaatacacccacagttcaaaggtaagtaagtgtcttataaaccatcccaaaa |
488912 |
T |
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| Q |
217 |
aatgttacatcagctattatcaattacaccaa |
248 |
Q |
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| T |
488911 |
aatgttacatcagttattatcaattacaccaa |
488880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 17 - 105
Target Start/End: Complemental strand, 514903 - 514815
Alignment:
| Q |
17 |
aaacatactaaactctcgagtcccaaacacatgtcaaaggtttgaatacaggttcctatgaatacagcgacagtatcaacaccaagttg |
105 |
Q |
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| T |
514903 |
aaacatagtaaactctcgagtcccaaacacatgtcaaaggtttgaatacaggttcctatgaatacagcgacagtatcaacaccaagttg |
514815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 293 - 360
Target Start/End: Complemental strand, 488835 - 488768
Alignment:
| Q |
293 |
atatagaaagagagtcgttgaatctagatgggaaaacagtgctgtgtctggaagcaatgaagttaatg |
360 |
Q |
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| T |
488835 |
atatagaaagagagtcgttgaatctagatgggaaaacggtgctgtgtctggaagcaatgaagttaatg |
488768 |
T |
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