View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6284_low_6 (Length: 251)
Name: NF6284_low_6
Description: NF6284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6284_low_6 |
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| [»] chr3 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 11 - 251
Target Start/End: Original strand, 31426820 - 31427060
Alignment:
| Q |
11 |
cacagaagaattcaaagttgctttgcatgtgatgatttacaaggctgaaggaatcgacaaccccgcaaattacccaagtgttaacaacagagcttacaat |
110 |
Q |
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| T |
31426820 |
cacagaagaattcaaagttgctttgcatgtgatgatttacaaggctgaaggaatcgacaaccccgcaaattacccaagtgttaacaacagagcttacaat |
31426919 |
T |
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| Q |
111 |
gtggtgtattggttaaagcctgatgaagaagcttccaccaagattgctgtaggtgttaaccctgaatggaatcaagatgatatggtcgtgttagagaatc |
210 |
Q |
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| T |
31426920 |
gtggtgtattggttaaagcctgatgaagaagcttccaccaagattgctgtaggtgttaaccctgaatggaatcaagatgatatggtcgtgttagagaatc |
31427019 |
T |
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| Q |
211 |
ttgatgatgaagttttactgaatgttgagttacagaggttt |
251 |
Q |
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| T |
31427020 |
ttgatgatgaagtttttctgaatgttgaggtacagaggttt |
31427060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 11 - 251
Target Start/End: Original strand, 7171781 - 7172021
Alignment:
| Q |
11 |
cacagaagaattcaaagttgctttgcatgtgatgatttacaaggctgaaggaatcgacaaccccgcaaattacccaagtgttaacaacagagcttacaat |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |
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| T |
7171781 |
cacagaagaattcaaagttgctttgcatgtgatgattttcaaggctgaaggaatcgacaaccccacaaattatccaagtgttaacaacagagcttacaat |
7171880 |
T |
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| Q |
111 |
gtggtgtattggttaaagcctgatgaagaagcttccaccaagattgctgtaggtgttaaccctgaatggaatcaagatgatatggtcgtgttagagaatc |
210 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||||| |
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| T |
7171881 |
gtggtgtactggttaaagcctgatgaagaagcttccaccaagattgcggtaggtgttaaccctgaaaggaatcaagatgatatgatcgtgttagagaatc |
7171980 |
T |
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| Q |
211 |
ttgatgatgaagttttactgaatgttgagttacagaggttt |
251 |
Q |
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| T |
7171981 |
ttgatgatgaagtttttctgaatgttgaggtacagaggttt |
7172021 |
T |
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