View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6284_low_7 (Length: 238)
Name: NF6284_low_7
Description: NF6284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6284_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 31427052 - 31427273
Alignment:
| Q |
1 |
cagaggtttgattctttgcttgatcctggaacttctagtggtaaagttgtgatagggagggtgaagattcctgttccgatggagttttatcgacgtaaag |
100 |
Q |
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| T |
31427052 |
cagaggtttgattctttgcttgatcctggaacttctagtggtaaagttgtgatagggagggtgaagattcctgttccgatggagttttatcgacgtaaag |
31427151 |
T |
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| Q |
101 |
ttgggtcgtttcctctgcttaggagtgatggaaatggaaataggcttgaagggagtattctgcttgctatgagacttcagagaatcaagggtgattctga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31427152 |
ttgggtcgtttcctctgcttaggagtgatggaaatggaaataggcttgaagggagtattctgcttgctatgagacttcagagaatcaagggtgattctga |
31427251 |
T |
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| Q |
201 |
ctctactcttcaatattatgct |
222 |
Q |
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||||||||||||||||||||| |
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| T |
31427252 |
atctactcttcaatattatgct |
31427273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 7172013 - 7172234
Alignment:
| Q |
1 |
cagaggtttgattctttgcttgatcctggaacttctagtggtaaagttgtgatagggagggtgaagattcctgttccgatggagttttatcgacgtaaag |
100 |
Q |
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||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||| |||| |
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| T |
7172013 |
cagaggtttaattctttgcttgatcctggtacttctagtggtaaagttgtggtagggagggtgaagattccggttccttaggagttttatcgacgaaaag |
7172112 |
T |
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| Q |
101 |
ttgggtcgtttcctctgcttaggagtgatggaaatggaaataggcttgaagggagtattctgcttgctatgagacttcagagaatcaagggtgattctga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7172113 |
ttgggtcgtttcctctgcttaggagtgatggaaatggaaagaggcttgaagggagtattctgcttgctatgagacttcagagaatcaagggtgattctga |
7172212 |
T |
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| Q |
201 |
ctctactcttcaatattatgct |
222 |
Q |
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|| |||||||||||||||||| |
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| T |
7172213 |
atcaactcttcaatattatgct |
7172234 |
T |
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