View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6284_low_8 (Length: 237)

Name: NF6284_low_8
Description: NF6284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6284_low_8
NF6284_low_8
[»] chr2 (2 HSPs)
chr2 (1-222)||(18725924-18726145)
chr2 (45-201)||(8781098-8781250)
[»] chr3 (6 HSPs)
chr3 (45-209)||(4580143-4580304)
chr3 (70-218)||(33620340-33620485)
chr3 (69-207)||(20398748-20398883)
chr3 (142-207)||(25857404-25857468)
chr3 (149-209)||(39913572-39913632)
chr3 (152-207)||(25340424-25340479)
[»] chr6 (4 HSPs)
chr6 (44-222)||(3565320-3565495)
chr6 (148-218)||(2940025-2940095)
chr6 (69-207)||(19231934-19232069)
chr6 (50-187)||(19474990-19475124)
[»] chr1 (3 HSPs)
chr1 (142-218)||(42071655-42071731)
chr1 (139-199)||(49043702-49043762)
chr1 (148-192)||(42646362-42646406)
[»] chr8 (1 HSPs)
chr8 (150-209)||(26150369-26150428)
[»] chr7 (4 HSPs)
chr7 (140-209)||(31578189-31578258)
chr7 (89-199)||(4668397-4668504)
chr7 (148-209)||(5678548-5678609)
chr7 (148-209)||(5703600-5703661)


Alignment Details
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 18726145 - 18725924
Alignment:
Q  1 agttgtaaagtctgaaaggacaaaaactgtaacactattgttcttgatataggcaagctggcagtgcaaatcgaagacgaagtgatgcgcaagaaaggtt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  ||||||||||||||||||| ||||||||||||    
T  18726145 agttgtaaagtctgaaaggacaaaaactgtaacactattgttcttgatatagacaagctggcagtgagaatcgaagacgaagtgatgggcaagaaaggtt 18726046  T
Q  101 caatcgcattgatggagattttgcatccggtgtcgacggaatgatctgaattataccttttcggaaagccccggacctcacgagcaatactcatcgcttt 200  Q
    || ||| |||| |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||    
T  18726045 cagtcggattggtggagattttgcatccggtgtcgatggaatgatctgagttataccttttcggaaagccccggacttcacgagcaatactcatcgcttt 18725946  T
Q  201 gccatgatgcagaggttaattt 222  Q
    ||||||||||||||||||||||    
T  18725945 gccatgatgcagaggttaattt 18725924  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 45 - 201
Target Start/End: Original strand, 8781098 - 8781250
Alignment:
Q  45 tgatataggcaagctggcagtgcaaatcgaagacgaagtgatgcgcaagaaaggttcaatcgcattgatggagattttgcatccggtgtcgacggaatga 144  Q
    |||| ||| |||||| ||||  |||||| |||||||||||  |||||||||||||||| ||  |  | || |||||||||||| ||||||    |  |||    
T  8781098 tgatgtagacaagctagcagcacaaatcaaagacgaagtggcgcgcaagaaaggttcagtcagaacggtgcagattttgcatctggtgtcc---gtttga 8781194  T
Q  145 tctgaattataccttttcggaaagccccggacctcacgagcaatactcatcgctttg 201  Q
     |||||| ||||||||| | ||||||||||||||||||||||| |||||| ||||||    
T  8781195 cctgaat-atacctttttgaaaagccccggacctcacgagcaaaactcatagctttg 8781250  T

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Target: chr3 (Bit Score: 67; Significance: 7e-30; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 45 - 209
Target Start/End: Original strand, 4580143 - 4580304
Alignment:
Q  45 tgatataggcaagctggcagtgcaaatcgaagacgaagtgatgcgcaagaaaggttcaatcgcattgatggagattttgcatccggtgtcgacggaatga 144  Q
    |||| ||| |||||||| || || |||||||||| |||||  || ||||||||||||| ||| | ||||| | ||||||||||| ||||||   ||||||    
T  4580143 tgatgtagacaagctggtagcgcgaatcgaagacaaagtggggcccaagaaaggttcactcggaatgatgcatattttgcatccagtgtcg---gaatga 4580239  T
Q  145 tctgaattataccttttcggaaagccccggacctcacgagcaatactcatcgctttgccatgatg 209  Q
     | ||||||||||||||||||||||||||||||||| |||||| ||||||| ||||| |||||||    
T  4580240 cccgaattataccttttcggaaagccccggacctcaagagcaaaactcatcactttgtcatgatg 4580304  T

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Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 70 - 218
Target Start/End: Complemental strand, 33620485 - 33620340
Alignment:
Q  70 atcgaagacgaagtgatgcgcaagaaaggttcaatcgcattgatggagattttgcatccggtgtcgacggaatgatctgaattataccttttcggaaagc 169  Q
    |||||||||||||||| |||||||||||||||| ||| | || || | ||||| ||||||||||||   |||||| | |||||||| |||||||||||||    
T  33620485 atcgaagacgaagtgacgcgcaagaaaggttcactcggaatggtgtatattttacatccggtgtcg---gaatgacccgaattatatcttttcggaaagc 33620389  T
Q  170 cccggacctcacgagcaatactcatcgctttgccatgatgcagaggtta 218  Q
     ||||||||||| ||||| | |||| ||| | |||||||| || |||||    
T  33620388 tccggacctcacaagcaaaattcatggctcttccatgatgtaggggtta 33620340  T

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Target: chr3; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 69 - 207
Target Start/End: Complemental strand, 20398883 - 20398748
Alignment:
Q  69 aatcgaagacgaagtgatgcgcaagaaaggttcaatc-gcattgatggagattttgcatccggtgtcgacggaatgatctgaattataccttttcggaaa 167  Q
    ||||||||||||||||  |||||||||||||||| || | |||| || ||||||| |||||||||||    || ||||| |||||||| |||||||||||    
T  20398883 aatcgaagacgaagtggcgcgcaagaaaggttcagtcagaattg-tgcagattttacatccggtgtca---gattgatcagaattatatcttttcggaaa 20398788  T
Q  168 gccccggacctcacgagcaatactcatcgctttgccatga 207  Q
     ||  ||||||||||||||  |||||||||||||||||||    
T  20398787 accttggacctcacgagcagaactcatcgctttgccatga 20398748  T

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Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 142 - 207
Target Start/End: Original strand, 25857404 - 25857468
Alignment:
Q  142 tgatctgaattataccttttcggaaagccccggacctcacgagcaatactcatcgctttgccatga 207  Q
    ||||||||||||||||||||||||||| | |||||||||||||||| || |||||||| |||||||    
T  25857404 tgatctgaattataccttttcggaaag-ctcggacctcacgagcaaaacacatcgcttcgccatga 25857468  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 149 - 209
Target Start/End: Complemental strand, 39913632 - 39913572
Alignment:
Q  149 aattataccttttcggaaagccccggacctcacgagcaatactcatcgctttgccatgatg 209  Q
    |||||||||||||||||||||  | |||||||||||||| || |||| |||||||||||||    
T  39913632 aattataccttttcggaaagcgtcagacctcacgagcaaaacacatcactttgccatgatg 39913572  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 207
Target Start/End: Complemental strand, 25340479 - 25340424
Alignment:
Q  152 tataccttttcggaaagccccggacctcacgagcaatactcatcgctttgccatga 207  Q
    ||||||||||||||||||||| |||||||||||||  || |||  |||||||||||    
T  25340479 tataccttttcggaaagccccagacctcacgagcataacccattactttgccatga 25340424  T

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Target: chr6 (Bit Score: 57; Significance: 6e-24; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 44 - 222
Target Start/End: Original strand, 3565320 - 3565495
Alignment:
Q  44 ttgatataggcaagctggcagtgcaaatcgaagacgaagtgatgcgcaagaaaggttcaatcgcattgatggagattttgcatccggtgtcgacggaatg 143  Q
    ||||| ||| |||| |||||| || ||||||||||||||||  ||| |||||||||| | ||| |||| ||  ||||| |||||||  ||||   ||||     
T  3565320 ttgatgtagacaagttggcagcgcgaatcgaagacgaagtggcgcgtaagaaaggtttagtcggattggtgctgatttagcatccgacgtcg---gaata 3565416  T
Q  144 atctgaattataccttttcggaaagccccggacctcacgagcaatactcatcgctttgccatgatgcagaggttaattt 222  Q
    |  ||||||| ||||||| | ||||||||||||||||||||||||||||||||||||| ||||||| ||  ||||||||    
T  3565417 acatgaattaaacctttttgaaaagccccggacctcacgagcaatactcatcgctttgtcatgatgtaggagttaattt 3565495  T

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Target: chr6; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 148 - 218
Target Start/End: Complemental strand, 2940095 - 2940025
Alignment:
Q  148 gaattataccttttcggaaagccccggacctcacgagcaatactcatcgctttgccatgatgcagaggtta 218  Q
    |||||||||||||| ||||||||||| |||||||||||||  |||||||||||||||||||| || |||||    
T  2940095 gaattatacctttttggaaagccccgaacctcacgagcaaagctcatcgctttgccatgatgtaggggtta 2940025  T

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Target: chr6; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 69 - 207
Target Start/End: Original strand, 19231934 - 19232069
Alignment:
Q  69 aatcgaagacgaagtgatgcgcaagaaaggttcaatcgcattgatggagattttgcatccggtgtcgacggaatgatctgaattataccttttcggaaag 168  Q
    ||||||||| |||||| || | |||||||||||| ||| |  | || | |||||||||||||||||    |  || ||||||||||||||||| ||||||    
T  19231934 aatcgaagatgaagtggtgtgtaagaaaggttcagtcggaacggtgcatattttgcatccggtgtct---gtttggtctgaattatacctttttggaaag 19232030  T
Q  169 ccccggacctcacgagcaatactcatcgctttgccatga 207  Q
    |||| ||||||||||| || ||||||| |||||||||||    
T  19232031 ccccagacctcacgagaaaaactcatcactttgccatga 19232069  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 187
Target Start/End: Complemental strand, 19475124 - 19474990
Alignment:
Q  50 taggcaagctggcagtgcaaatcgaagacgaagtgatgcgcaagaaaggttcaatcgcattgatggagattttgcatccggtgtcgacggaatgatctga 149  Q
    ||||||| ||||| ||| | |||||||| |||| |  |||||| ||||||||| ||  | |  || |||||| |||||||||||||   ||||||   ||    
T  19475124 taggcaaactggcggtggatatcgaagatgaagcggagcgcaaaaaaggttcactcagaatagtgcagatttggcatccggtgtcg---gaatgactcga 19475028  T
Q  150 attataccttttcggaaagccccggacctcacgagcaa 187  Q
    ||||||| |||| ||||| |||||||||||||||||||    
T  19475027 attatacatttttggaaatccccggacctcacgagcaa 19474990  T

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Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 142 - 218
Target Start/End: Complemental strand, 42071731 - 42071655
Alignment:
Q  142 tgatctgaattataccttttcggaaagccccggacctcacgagcaatactcatcgctttgccatgatgcagaggtta 218  Q
    ||||| ||||| |||||||||| |||| |||||||||| ||||||| ||||||||||||||||||||| || |||||    
T  42071731 tgatccgaattgtaccttttcgaaaagtcccggacctcgcgagcaaaactcatcgctttgccatgatgtaggggtta 42071655  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 139 - 199
Target Start/End: Original strand, 49043702 - 49043762
Alignment:
Q  139 gaatgatctgaattataccttttcggaaagccccggacctcacgagcaatactcatcgctt 199  Q
    |||||| | ||||||||||||||||||||||  |||| ||||||||||| |||||||||||    
T  49043702 gaatgacccgaattataccttttcggaaagcatcggatctcacgagcaaaactcatcgctt 49043762  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 192
Target Start/End: Original strand, 42646362 - 42646406
Alignment:
Q  148 gaattataccttttcggaaagccccggacctcacgagcaatactc 192  Q
    |||||||||||||||||||||| || || ||||||||||| ||||    
T  42646362 gaattataccttttcggaaagcaccagatctcacgagcaaaactc 42646406  T

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Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 150 - 209
Target Start/End: Original strand, 26150369 - 26150428
Alignment:
Q  150 attataccttttcggaaagccccggacctcacgagcaatactcatcgctttgccatgatg 209  Q
    ||||||| |||||||||||| ||||| ||||||||||| | |||||||||||||||||||    
T  26150369 attatactttttcggaaagctccggatctcacgagcaaaaatcatcgctttgccatgatg 26150428  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 209
Target Start/End: Complemental strand, 31578258 - 31578189
Alignment:
Q  140 aatgatctgaattataccttttcggaaagccccggacctcacgagcaatactcatcgctttgccatgatg 209  Q
    |||||||  ||||||||||||||||||||||| ||||||||| ||||| || ||| || |||||||||||    
T  31578258 aatgatccaaattataccttttcggaaagccctggacctcacaagcaaaacacatggccttgccatgatg 31578189  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 89 - 199
Target Start/End: Complemental strand, 4668504 - 4668397
Alignment:
Q  89 gcaagaaaggttcaatcgcattgatggagattttgcatccggtgtcgacggaatgatctgaattataccttttcggaaagccccggacctcacgagcaat 188  Q
    |||||||| ||||||||| | || || ||||||||| | ||||||||   |||| | |  |||||||||||||||||||| | | ||||||||||||||     
T  4668504 gcaagaaaagttcaatcgaagtggtgtagattttgctttcggtgtcg---gaattaccataattataccttttcggaaagtctcagacctcacgagcaaa 4668408  T
Q  189 actcatcgctt 199  Q
    |||||||||||    
T  4668407 actcatcgctt 4668397  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 209
Target Start/End: Complemental strand, 5678609 - 5678548
Alignment:
Q  148 gaattataccttttcggaaagccccggacctcacgagcaatactcatcgctttgccatgatg 209  Q
    ||||||||||||||| |||||||||  ||||||||||||| | |||| | | ||||||||||    
T  5678609 gaattataccttttcagaaagcccctaacctcacgagcaaaaatcatggatctgccatgatg 5678548  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 209
Target Start/End: Complemental strand, 5703661 - 5703600
Alignment:
Q  148 gaattataccttttcggaaagccccggacctcacgagcaatactcatcgctttgccatgatg 209  Q
    ||||||||||||||| |||||||||  ||||||||||||| | |||| | | ||||||||||    
T  5703661 gaattataccttttcagaaagcccctaacctcacgagcaaaaatcatggatctgccatgatg 5703600  T

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