View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6285_high_3 (Length: 318)
Name: NF6285_high_3
Description: NF6285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6285_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 14 - 301
Target Start/End: Original strand, 31870224 - 31870514
Alignment:
| Q |
14 |
agatcgccaaccatttacttcgatccaatccagagcaaacttcacacccagcgcttcagccatgcaagggtcgtccggagcttccaccgtcctagttgcc |
113 |
Q |
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| T |
31870224 |
agatcgtcaaccatttacttctatcctatccagatcaaacttcacacccagcgcttcagccatgcaagggtcgttcggagcttccaccgtcctagttgcc |
31870323 |
T |
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| Q |
114 |
atgtttgtta-------gtattgaaagttgtgaaaaattacgttattcctaggaacctttttaccgaggaataatggtttctcaattttataacaaacat |
206 |
Q |
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| T |
31870324 |
atgtttgttacatgggagtattgaaagttgtgaaaagttacgttattcctaagaacctttttaccgaggaatactggtttctcaattttataacaaacat |
31870423 |
T |
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| Q |
207 |
gagtatacttacttattccttatttatgtattcccaggattgtatctccttcaagttcaacttctcatggtatgaatcacccgaaagctcaataa |
301 |
Q |
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| T |
31870424 |
gagta----tacttattcctaatttatgtattcccatgattgtatctccttcaagttcaacttctcatgatatgaatcacccgaaggctcaataa |
31870514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 15 - 114
Target Start/End: Complemental strand, 30264776 - 30264677
Alignment:
| Q |
15 |
gatcgccaaccatttacttcgatccaatccagagcaaacttcacacccagcgcttcagccatgcaagggtcgtccggagcttccaccgtcctagttgcca |
114 |
Q |
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| T |
30264776 |
gatctccaaccatttacttcgatccaatccagcgcaacctttactcccatcgcttcagccatgcagggatcgtctggtgcttctactgtcctagttgcca |
30264677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 213
Target Start/End: Original strand, 26674290 - 26674352
Alignment:
| Q |
151 |
attcctaggaacctttttaccgaggaataatggtttctcaattttataacaaacatgagtata |
213 |
Q |
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| T |
26674290 |
attcctaggaacctttatacccaggaatatttttttctcaatctcataacaaacatgggtata |
26674352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 213
Target Start/End: Original strand, 26945896 - 26945958
Alignment:
| Q |
151 |
attcctaggaacctttttaccgaggaataatggtttctcaattttataacaaacatgagtata |
213 |
Q |
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| T |
26945896 |
attcctaggaacctttatacccaggaatatttttttctcaatctcataacaaacatgggtata |
26945958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 213
Target Start/End: Complemental strand, 32498257 - 32498172
Alignment:
| Q |
127 |
ttgaaagttgtgaaaaattacgttattcctaggaacctttttaccgaggaataatggtttctcaattttataacaaacatgagtata |
213 |
Q |
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| T |
32498257 |
ttgaaagttttgagaaattattttattctcaggaaccttgttac-gaggaataatgatttctaaatctcataacaaacatgtgtata |
32498172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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