View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6285_low_1 (Length: 451)

Name: NF6285_low_1
Description: NF6285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6285_low_1
NF6285_low_1
[»] chr4 (8 HSPs)
chr4 (82-317)||(4891932-4892169)
chr4 (125-189)||(9461625-9461689)
chr4 (134-221)||(4890881-4890968)
chr4 (195-252)||(56270669-56270726)
chr4 (104-204)||(53595008-53595108)
chr4 (206-317)||(12096516-12096627)
chr4 (125-204)||(33075152-33075231)
chr4 (232-286)||(40681352-40681407)
[»] chr3 (5 HSPs)
chr3 (79-223)||(14859048-14859194)
chr3 (232-286)||(32304384-32304439)
chr3 (125-204)||(36982695-36982774)
chr3 (125-204)||(37008134-37008213)
chr3 (118-155)||(46453166-46453203)
[»] chr1 (7 HSPs)
chr1 (104-223)||(5804717-5804836)
chr1 (254-317)||(51242750-51242812)
chr1 (232-286)||(47112964-47113019)
chr1 (195-253)||(35122387-35122445)
chr1 (117-155)||(52285091-52285129)
chr1 (185-254)||(36967137-36967206)
chr1 (247-286)||(49653561-49653601)
[»] chr8 (5 HSPs)
chr8 (104-222)||(22191822-22191939)
chr8 (195-254)||(2221840-2221899)
chr8 (232-286)||(13462999-13463054)
chr8 (195-254)||(40229215-40229273)
chr8 (143-204)||(16905318-16905379)
[»] chr6 (7 HSPs)
chr6 (82-200)||(20489379-20489498)
chr6 (232-286)||(12260598-12260653)
chr6 (143-204)||(12586722-12586783)
chr6 (73-168)||(21611906-21612003)
chr6 (232-286)||(27129730-27129785)
chr6 (125-204)||(28866354-28866433)
chr6 (185-254)||(714632-714701)
[»] chr2 (8 HSPs)
chr2 (256-317)||(8885882-8885942)
chr2 (256-332)||(12601461-12601535)
chr2 (125-221)||(11129927-11130023)
chr2 (232-286)||(8029118-8029173)
chr2 (232-286)||(19297680-19297735)
chr2 (195-254)||(38806968-38807027)
chr2 (185-254)||(32194715-32194783)
chr2 (247-286)||(40468214-40468254)
[»] chr7 (5 HSPs)
chr7 (107-188)||(10990548-10990629)
chr7 (232-286)||(17279293-17279348)
chr7 (195-254)||(15573521-15573580)
chr7 (78-202)||(21709154-21709280)
chr7 (231-288)||(22056175-22056232)
[»] chr5 (2 HSPs)
chr5 (185-254)||(27850786-27850854)
chr5 (232-283)||(23083433-23083485)
[»] scaffold0031 (2 HSPs)
scaffold0031 (74-168)||(123416-123512)
scaffold0031 (74-168)||(134292-134388)
[»] scaffold0006 (1 HSPs)
scaffold0006 (185-254)||(83273-83341)
[»] scaffold0202 (1 HSPs)
scaffold0202 (243-286)||(21391-21435)


Alignment Details
Target: chr4 (Bit Score: 91; Significance: 6e-44; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 82 - 317
Target Start/End: Complemental strand, 4892169 - 4891932
Alignment:
Q  82 ggcttaattgctattttgt--ccgtaagtattttgttagtattgatttggtctcataagtaataaaaagaccgtttgtgttctttaaattcattttcgtt 179  Q
    |||||||||||||||||    || ||||| |||| ||||||| | || |||| ||||||||||||||   | ||||| || | |||||||||||||||||    
T  4892169 ggcttaattgctattttcatcccttaagtttttttttagtatcgcttaggtcgcataagtaataaaagatctgtttgagtcccttaaattcattttcgtt 4892070  T
Q  180 acattttttgatcccttccgttagggttgtgaaaaaactgttaactcgtggacacgtgtcagcttgacattggctaaaaacttaattcattttcttcatc 279  Q
    ||| |||||||||| | |||||||||||||||||||||||||||||  ||||||| |||||| ||| ||| || | ||||||||||| |||| ||| |||    
T  4892069 acactttttgatccataccgttagggttgtgaaaaaactgttaacttatggacacatgtcagtttggcataggttgaaaacttaattaatttcctttatc 4891970  T
Q  280 ttctccatctgaatctttcaattccttcatccatttct 317  Q
    |||||||||| |||||||  | ||||||||||||||||    
T  4891969 ttctccatctaaatctttggactccttcatccatttct 4891932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 125 - 189
Target Start/End: Original strand, 9461625 - 9461689
Alignment:
Q  125 tttggtctcataagtaataaaaagaccgtttgtgttctttaaattcattttcgttacattttttg 189  Q
    ||||||||||||||||||||| ||||||||||  |  ||||||||||||||||||||| ||||||    
T  9461625 tttggtctcataagtaataaagagaccgtttgaatcttttaaattcattttcgttacaatttttg 9461689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 134 - 221
Target Start/End: Original strand, 4890881 - 4890968
Alignment:
Q  134 ataagtaataaaaagaccgtttgtgttctttaaattcattttcgttacattttttgatcccttccgttagggttgtgaaaaaactgtt 221  Q
    ||||||||||||| |   ||||| || ||||||||| |||||||||||| |||||| ||| ||||||||| |||||| ||||||||||    
T  4890881 ataagtaataaaaggtttgtttgagtcctttaaatttattttcgttacactttttggtcctttccgttagagttgtggaaaaactgtt 4890968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 195 - 252
Target Start/End: Original strand, 56270669 - 56270726
Alignment:
Q  195 ttccgttagggttgtgaaaaaactgttaactcgtggacacgtgtcagcttgacattgg 252  Q
    ||||||||||||| | ||||||| |||||||| ||||||||||||| |||| ||||||    
T  56270669 ttccgttagggttttaaaaaaacagttaactcctggacacgtgtcaccttgtcattgg 56270726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 104 - 204
Target Start/End: Original strand, 53595008 - 53595108
Alignment:
Q  104 taagtattttgttagtattgatttggtctcataagtaataaaaagaccgtttgtgttctttaaattcattttcgttacattttttgatcccttccgttag 203  Q
    |||||||||  || |||| | ||||||| | ||| ||| |||||||  ||||| || |||||| || ||||||||||||||||||| ||| |||||||||    
T  53595008 taagtatttatttggtatcgctttggtcccttaactaaaaaaaagattgtttgagtactttaatttaattttcgttacattttttggtccattccgttag 53595107  T
Q  204 g 204  Q
    |    
T  53595108 g 53595108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 206 - 317
Target Start/End: Complemental strand, 12096627 - 12096516
Alignment:
Q  206 ttgtgaaaaaactgttaactcgtggacacgtgtcagcttgacattggctaaaaacttaattcattttcttcatcttctccatctgaatctttcaattcct 305  Q
    ||||||||||| | ||||||  || ||||||||||  ||   ||||||| |||| | |||| |||||||||||||||||||| | |||||| ||  || |    
T  12096627 ttgtgaaaaaattattaactaatgtacacgtgtcattttagtattggctgaaaattgaatttattttcttcatcttctccatatcaatcttgcatctcat 12096528  T
Q  306 tcatccatttct 317  Q
    ||||||||||||    
T  12096527 tcatccatttct 12096516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 125 - 204
Target Start/End: Complemental strand, 33075231 - 33075152
Alignment:
Q  125 tttggtctcataagtaataaaaagaccgtttgtgttctttaaattcattttcgttacattttttgatcccttccgttagg 204  Q
    ||||||| |||||||||||||||| ||||||| || ||||| ||  ||||||||||||  ||||  || |||||||||||    
T  33075231 tttggtcccataagtaataaaaagtccgtttgagtactttacatatattttcgttacacgttttagtctcttccgttagg 33075152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 232 - 286
Target Start/End: Complemental strand, 40681407 - 40681352
Alignment:
Q  232 cacgtgtcagcttgacattggct-aaaaacttaattcattttcttcatcttctcca 286  Q
    |||||||||  ||| |||||||| |||||||||||| |||||||||||||||||||    
T  40681407 cacgtgtcattttggcattggctgaaaaacttaatttattttcttcatcttctcca 40681352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 8e-28; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 79 - 223
Target Start/End: Complemental strand, 14859194 - 14859048
Alignment:
Q  79 ttaggcttaattgctattttgt--ccgtaagtattttgttagtattgatttggtctcataagtaataaaaagaccgtttgtgttctttaaattcattttc 176  Q
    |||||||||||||||||||| |  || ||| |||||| ||||||| | ||||||  |||||||||||||||| |  |||| ||  |||||||| ||||||    
T  14859194 ttaggcttaattgctattttcttcccttaaatatttttttagtatcgctttggttccataagtaataaaaagtctatttgagtcatttaaattaattttc 14859095  T
Q  177 gttacattttttgatcccttccgttagggttgtgaaaaaactgttaa 223  Q
     ||||| |||||| |||||||||||||||||||||||||||||||||    
T  14859094 attacactttttggtcccttccgttagggttgtgaaaaaactgttaa 14859048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 232 - 286
Target Start/End: Original strand, 32304384 - 32304439
Alignment:
Q  232 cacgtgtcagcttgacattggct-aaaaacttaattcattttcttcatcttctcca 286  Q
    |||||||||  ||| |||||||| |||||||||||| |||||||||||||||||||    
T  32304384 cacgtgtcattttggcattggctgaaaaacttaatttattttcttcatcttctcca 32304439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 125 - 204
Target Start/End: Original strand, 36982695 - 36982774
Alignment:
Q  125 tttggtctcataagtaataaaaagaccgtttgtgttctttaaattcattttcgttacattttttgatcccttccgttagg 204  Q
    ||||||| |||||||||||||||| | ||||| || ||||| ||| ||||||||||||  ||||  || |||||||||||    
T  36982695 tttggtcccataagtaataaaaagtctgtttgagtcctttacatttattttcgttacacgttttagtctcttccgttagg 36982774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 125 - 204
Target Start/End: Original strand, 37008134 - 37008213
Alignment:
Q  125 tttggtctcataagtaataaaaagaccgtttgtgttctttaaattcattttcgttacattttttgatcccttccgttagg 204  Q
    ||||||| |||||||||||||||| | ||||| || ||||| ||| ||||||||||||  ||||  || |||||||||||    
T  37008134 tttggtcccataagtaataaaaagtctgtttgagtcctttacatttattttcgttacacgttttagtctcttccgttagg 37008213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 118 - 155
Target Start/End: Complemental strand, 46453203 - 46453166
Alignment:
Q  118 gtattgatttggtctcataagtaataaaaagaccgttt 155  Q
    |||||| |||||||||||||||||||||||| ||||||    
T  46453203 gtattgttttggtctcataagtaataaaaagtccgttt 46453166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 104 - 223
Target Start/End: Original strand, 5804717 - 5804836
Alignment:
Q  104 taagtattttgttagtattgatttggtctcataagtaataaaaagaccgtttgtgttctttaaattcattttcgttacattttttgatcccttccgttag 203  Q
    |||||||||  || |||| | ||||||| | ||| ||| |||||||  ||||  || |||||| || ||||| ||||||||||||| |||||||||||||    
T  5804717 taagtatttatttggtatcgctttggtcccttaactaaaaaaaagattgtttcagtactttaatttaatttttgttacattttttggtcccttccgttag 5804816  T
Q  204 ggttgtgaaaaaactgttaa 223  Q
    ||||||||||||||||||||    
T  5804817 ggttgtgaaaaaactgttaa 5804836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 254 - 317
Target Start/End: Complemental strand, 51242812 - 51242750
Alignment:
Q  254 taaaaacttaattcattttcttcatcttctccatctgaatctttcaattccttcatccatttct 317  Q
    ||||||||| |||||||| ||||||||||||||| |||||||||||| ||||||||||||||||    
T  51242812 taaaaacttcattcattt-cttcatcttctccatttgaatctttcaactccttcatccatttct 51242750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 232 - 286
Target Start/End: Complemental strand, 47113019 - 47112964
Alignment:
Q  232 cacgtgtcagcttgacattggct-aaaaacttaattcattttcttcatcttctcca 286  Q
    |||||||||  |||||||||||| |||||||||||| |||||||||||||||||||    
T  47113019 cacgtgtcattttgacattggctgaaaaacttaatttattttcttcatcttctcca 47112964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 195 - 253
Target Start/End: Original strand, 35122387 - 35122445
Alignment:
Q  195 ttccgttagggttgtgaaaaaactgttaactcgtggacacgtgtcagcttgacattggc 253  Q
    ||||||||||||| | ||||||  |||||||| ||||||||||||| |||| |||||||    
T  35122387 ttccgttagggttttaaaaaaaaggttaactcctggacacgtgtcaccttgtcattggc 35122445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 117 - 155
Target Start/End: Original strand, 52285091 - 52285129
Alignment:
Q  117 agtattgatttggtctcataagtaataaaaagaccgttt 155  Q
    ||||||| |||||||||||||||||||||||| ||||||    
T  52285091 agtattggtttggtctcataagtaataaaaagtccgttt 52285129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 254
Target Start/End: Complemental strand, 36967206 - 36967137
Alignment:
Q  185 ttttgatcccttccgttagggttgtgaaaaaactgttaactcgtggacacgtgtcagcttgacattggct 254  Q
    ||||| ||||||| ||||||||| | ||||||  || ||||| ||||||||||||| |||| ||||||||    
T  36967206 ttttggtcccttctgttagggttttaaaaaaaaagtaaactcatggacacgtgtcaccttgtcattggct 36967137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 247 - 286
Target Start/End: Complemental strand, 49653601 - 49653561
Alignment:
Q  247 cattggct-aaaaacttaattcattttcttcatcttctcca 286  Q
    |||||||| |||||||||||| |||||||||||||||||||    
T  49653601 cattggctgaaaaacttaatttattttcttcatcttctcca 49653561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 104 - 222
Target Start/End: Complemental strand, 22191939 - 22191822
Alignment:
Q  104 taagtattttgttagtattgatttggtctcataagtaataaaaagaccgtttgtgttctttaaattcattttcgttacattttttgatcccttccgttag 203  Q
    |||||||||| ||||||| | ||||||| | |||||||||||||| | ||||| ||  |||||||| |||||||||||| |||||| ||| |||| ||||    
T  22191939 taagtatttt-ttagtatcgctttggtcccgtaagtaataaaaagtctgtttgagtcttttaaattaattttcgttacactttttggtccattccattag 22191841  T
Q  204 ggttgtgaaaaaactgtta 222  Q
     |||||||||||| |||||    
T  22191840 agttgtgaaaaaattgtta 22191822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 195 - 254
Target Start/End: Complemental strand, 2221899 - 2221840
Alignment:
Q  195 ttccgttagggttgtgaaaaaactgttaactcgtggacacgtgtcagcttgacattggct 254  Q
    ||||||||||||| | ||||||  |||||||| ||||||||||||| |||| ||||||||    
T  2221899 ttccgttagggttttaaaaaaaaagttaactcctggacacgtgtcaccttgtcattggct 2221840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 232 - 286
Target Start/End: Complemental strand, 13463054 - 13462999
Alignment:
Q  232 cacgtgtcagcttgacattggct-aaaaacttaattcattttcttcatcttctcca 286  Q
    |||||||||  ||| |||||||| |||||||||||| |||||||||||||||||||    
T  13463054 cacgtgtcattttggcattggctgaaaaacttaatttattttcttcatcttctcca 13462999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 195 - 254
Target Start/End: Original strand, 40229215 - 40229273
Alignment:
Q  195 ttccgttagggttgtgaaaaaactgttaactcgtggacacgtgtcagcttgacattggct 254  Q
    ||||||||||||| | |||||| ||||||||| ||||||||||||| |||| ||||||||    
T  40229215 ttccgttagggttttaaaaaaa-tgttaactcctggacacgtgtcaccttgtcattggct 40229273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 204
Target Start/End: Original strand, 16905318 - 16905379
Alignment:
Q  143 aaaaagaccgtttgtgttctttaaattcattttcgttacattttttgatcccttccgttagg 204  Q
    |||||||  ||||| || |||||| || |||||| |||||||||||| ||||||||||||||    
T  16905318 aaaaagattgtttgagtactttaatttaattttcattacattttttggtcccttccgttagg 16905379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 7e-16; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 82 - 200
Target Start/End: Complemental strand, 20489498 - 20489379
Alignment:
Q  82 ggcttaattgctatttt-gtccgtaagtattttgttagtattgatttggtctcataagtaataaaaagaccgtttgtgttctttaaattcattttcgtta 180  Q
    ||||||||||||||||| |||| | |   |||| ||||||||| ||||||| ||||||||||||||||   ||||| || |||||| || ||||||||||    
T  20489498 ggcttaattgctattttagtcccttatgttttttttagtattgctttggtcccataagtaataaaaagtatgtttgagtcctttaattttattttcgtta 20489399  T
Q  181 cattttttgatcccttccgt 200  Q
    || |||||| ||||||||||    
T  20489398 cactttttggtcccttccgt 20489379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 232 - 286
Target Start/End: Original strand, 12260598 - 12260653
Alignment:
Q  232 cacgtgtcagcttgacattggct-aaaaacttaattcattttcttcatcttctcca 286  Q
    |||||||||  |||||||||||| |||||||||||| |||||||||||||||||||    
T  12260598 cacgtgtcattttgacattggctgaaaaacttaatttattttcttcatcttctcca 12260653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 143 - 204
Target Start/End: Original strand, 12586722 - 12586783
Alignment:
Q  143 aaaaagaccgtttgtgttctttaaattcattttcgttacattttttgatcccttccgttagg 204  Q
    |||||||  ||||| || |||||| || ||||||||||||||||||| ||||||||||||||    
T  12586722 aaaaagattgtttgagtactttaatttaattttcgttacattttttggtcccttccgttagg 12586783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 73 - 168
Target Start/End: Original strand, 21611906 - 21612003
Alignment:
Q  73 aatattttaggcttaattgctatttt-gtccgt-aagtattttgttagtattgatttggtctcataagtaataaaaagaccgtttgtgttctttaaat 168  Q
    |||||| ||||||||||||||||||| |||| | || || ||| || |||| ||||||||| ||||| |||||||||  ||||||| |||||||||||    
T  21611906 aatattctaggcttaattgctattttcgtcccttaactaattttttggtatcgatttggtcccataattaataaaaaatccgtttgagttctttaaat 21612003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 232 - 286
Target Start/End: Complemental strand, 27129785 - 27129730
Alignment:
Q  232 cacgtgtcagcttgacattggct-aaaaacttaattcattttcttcatcttctcca 286  Q
    |||||||||  ||| |||||||| |||||||||||| |||||||||||||||||||    
T  27129785 cacgtgtcattttggcattggctgaaaaacttaatttattttcttcatcttctcca 27129730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 125 - 204
Target Start/End: Complemental strand, 28866433 - 28866354
Alignment:
Q  125 tttggtctcataagtaataaaaagaccgtttgtgttctttaaattcattttcgttacattttttgatcccttccgttagg 204  Q
    ||||||| | ||| ||| |||||||  ||||| || |||||| || ||||||||||||||||||| ||| ||||||||||    
T  28866433 tttggtcccttaactaaaaaaaagattgtttgagtactttaatttaattttcgttacattttttggtccattccgttagg 28866354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 254
Target Start/End: Original strand, 714632 - 714701
Alignment:
Q  185 ttttgatcccttccgttagggttgtgaaaaaactgttaactcgtggacacgtgtcagcttgacattggct 254  Q
    ||||||||||||| ||||||| | | ||||||  |||||||| |||||||| |||| |||| ||||||||    
T  714632 ttttgatcccttctgttaggggttttaaaaaaaagttaactcctggacacgcgtcaccttgtcattggct 714701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 256 - 317
Target Start/End: Original strand, 8885882 - 8885942
Alignment:
Q  256 aaaacttaattcattttcttcatcttctccatctgaatctttcaattccttcatccatttct 317  Q
    ||||||| |||||||| |||||||||||||||||||||||||||| || |||||||||||||    
T  8885882 aaaacttcattcattt-cttcatcttctccatctgaatctttcaactcattcatccatttct 8885942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 256 - 332
Target Start/End: Original strand, 12601461 - 12601535
Alignment:
Q  256 aaaacttaattcattttcttcatcttctccatctgaatctttcaattccttcatccatttctccgaaaagtatgaag 332  Q
    ||||||| |||||||| |||||||| ||||||||||||||||||| |||||||||||||| |  |||||||||||||    
T  12601461 aaaacttcattcattt-cttcatctcctccatctgaatctttcaactccttcatccatttat-ggaaaagtatgaag 12601535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 125 - 221
Target Start/End: Original strand, 11129927 - 11130023
Alignment:
Q  125 tttggtctcataagtaataaaaagaccgtttgtgttctttaaattcattttcgttacattttttgatcccttccgttagggttgtgaaaaaactgtt 221  Q
    ||||||| | ||| |||||||||||  ||||  || |||||| || ||||| |||||| |||||| |||||| |||||| |||||||||||||||||    
T  11129927 tttggtcccttaactaataaaaagattgtttcagtactttaatttaatttttgttacactttttggtccctttcgttagagttgtgaaaaaactgtt 11130023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 232 - 286
Target Start/End: Original strand, 8029118 - 8029173
Alignment:
Q  232 cacgtgtcagcttgacattggct-aaaaacttaattcattttcttcatcttctcca 286  Q
    |||||||||  ||| |||||||| |||||||||||| |||||||||||||||||||    
T  8029118 cacgtgtcattttggcattggctgaaaaacttaatttattttcttcatcttctcca 8029173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 232 - 286
Target Start/End: Original strand, 19297680 - 19297735
Alignment:
Q  232 cacgtgtcagcttgacattggct-aaaaacttaattcattttcttcatcttctcca 286  Q
    |||||||||  ||| |||||||| |||||||||||| |||||||||||||||||||    
T  19297680 cacgtgtcattttggcattggctgaaaaacttaatttattttcttcatcttctcca 19297735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 195 - 254
Target Start/End: Original strand, 38806968 - 38807027
Alignment:
Q  195 ttccgttagggttgtgaaaaaactgttaactcgtggacacgtgtcagcttgacattggct 254  Q
    ||||||||||||| | ||||||  |||||||| ||||||||||||| |||| ||||||||    
T  38806968 ttccgttagggttttaaaaaaaaagttaactcctggacacgtgtcaccttgtcattggct 38807027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 254
Target Start/End: Complemental strand, 32194783 - 32194715
Alignment:
Q  185 ttttgatcccttccgttagggttgtgaaaaaactgttaactcgtggacacgtgtcagcttgacattggct 254  Q
    ||||| ||||||||||||||||| | ||||||  |||||||| ||||||||||||| ||||  |||||||    
T  32194783 ttttggtcccttccgttagggttttaaaaaaaa-gttaactcctggacacgtgtcaccttgtaattggct 32194715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 247 - 286
Target Start/End: Original strand, 40468214 - 40468254
Alignment:
Q  247 cattggct-aaaaacttaattcattttcttcatcttctcca 286  Q
    |||||||| |||||||||||| |||||||||||||||||||    
T  40468214 cattggctgaaaaacttaatttattttcttcatcttctcca 40468254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 107 - 188
Target Start/End: Complemental strand, 10990629 - 10990548
Alignment:
Q  107 gtattttgttagtattgatttggtctcataagtaataaaaagaccgtttgtgttctttaaattcattttcgttacatttttt 188  Q
    ||||||| ||||||| | |||| || |||||||||||||||| | ||||| || |||||||||||| |||||||||| ||||    
T  10990629 gtatttttttagtatcgctttgatcccataagtaataaaaagtctgtttgagtcctttaaattcatcttcgttacatatttt 10990548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 232 - 286
Target Start/End: Complemental strand, 17279348 - 17279293
Alignment:
Q  232 cacgtgtcagcttgacattggct-aaaaacttaattcattttcttcatcttctcca 286  Q
    |||||||||  |||||||||||| |||||||||||| |||||||||||||||||||    
T  17279348 cacgtgtcattttgacattggctgaaaaacttaatttattttcttcatcttctcca 17279293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 195 - 254
Target Start/End: Complemental strand, 15573580 - 15573521
Alignment:
Q  195 ttccgttagggttgtgaaaaaactgttaactcgtggacacgtgtcagcttgacattggct 254  Q
    ||||||||||||| | ||||||  |||||||| ||||||||||||| |||| ||||||||    
T  15573580 ttccgttagggttttcaaaaaaaagttaactcctggacacgtgtcaccttgtcattggct 15573521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 202
Target Start/End: Original strand, 21709154 - 21709280
Alignment:
Q  78 tttaggcttaattgctatttt-gtccgt-aagtattttgttagtattgatttggtctcataagtaataaaaagaccgtttgtgttctttaaattcatttt 175  Q
    ||||||||||||||||||||| |||| | || || ||| ||||||| | ||||||| ||||| |||||||||| ||||||  || ||||||||   | ||    
T  21709154 tttaggcttaattgctattttcgtcccttaactaattttttagtatcgctttggtcccataattaataaaaagtccgtttaagtcctttaaatatgtctt 21709253  T
Q  176 cgttacattttttgatcccttccgtta 202  Q
    ||||||||   ||| ||||||||||||    
T  21709254 cgttacataaattggtcccttccgtta 21709280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 288
Target Start/End: Original strand, 22056175 - 22056232
Alignment:
Q  231 acacgtgtcagcttgacattggctaaaaacttaattcattttcttcatcttctccatc 288  Q
    |||||||||| | | |||||| || ||||||||||| |||||||||||||||| ||||    
T  22056175 acacgtgtcatcataacattgactgaaaacttaatttattttcttcatcttcttcatc 22056232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 185 - 254
Target Start/End: Original strand, 27850786 - 27850854
Alignment:
Q  185 ttttgatcccttccgttagggttgtgaaaaaactgttaactcgtggacacgtgtcagcttgacattggct 254  Q
    ||||| ||||||||||||||||| | ||||||  |||||||| ||||||||||||| |||| ||||||||    
T  27850786 ttttggtcccttccgttagggttttaaaaaaaa-gttaactcctggacacgtgtcaccttgtcattggct 27850854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 232 - 283
Target Start/End: Complemental strand, 23083485 - 23083433
Alignment:
Q  232 cacgtgtcagcttgacattggct-aaaaacttaattcattttcttcatcttct 283  Q
    |||||||||  ||| |||||||| |||||||||||| ||||||||||||||||    
T  23083485 cacgtgtcattttggcattggctgaaaaacttaatttattttcttcatcttct 23083433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 74 - 168
Target Start/End: Original strand, 123416 - 123512
Alignment:
Q  74 atattttaggcttaattgctatttt-gt-ccgtaagtattttgttagtattgatttggtctcataagtaataaaaagaccgtttgtgttctttaaat 168  Q
    ||||||||||||||||||||||||| || || ||| || ||| || |||||| ||||||| ||||| |||||||||| ||| ||| || ||||||||    
T  123416 atattttaggcttaattgctattttcgtcccttaactaatttcttggtattgctttggtcccataattaataaaaagtccgcttgagtcctttaaat 123512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 74 - 168
Target Start/End: Original strand, 134292 - 134388
Alignment:
Q  74 atattttaggcttaattgctatttt-gt-ccgtaagtattttgttagtattgatttggtctcataagtaataaaaagaccgtttgtgttctttaaat 168  Q
    ||||||||||||||||||||||||| || || ||| || ||| || |||||| ||||||| ||||| |||||||||| ||| ||| || ||||||||    
T  134292 atattttaggcttaattgctattttcgtcccttaactaatttcttggtattgctttggtcccataattaataaaaagtccgcttgagtcctttaaat 134388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 254
Target Start/End: Complemental strand, 83341 - 83273
Alignment:
Q  185 ttttgatcccttccgttagggttgtgaaaaaactgttaactcgtggacacgtgtcagcttgacattggct 254  Q
    ||||| ||||||| ||||||||| | ||||||  |||||||| ||||||||||||| |||| ||||||||    
T  83341 ttttggtcccttctgttagggttttaaaaaaaa-gttaactcctggacacgtgtcaccttgtcattggct 83273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0202 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0202
Description:

Target: scaffold0202; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 243 - 286
Target Start/End: Original strand, 21391 - 21435
Alignment:
Q  243 ttgacattggct-aaaaacttaattcattttcttcatcttctcca 286  Q
    |||||||||||| ||||| |||||| |||||||||||||||||||    
T  21391 ttgacattggctgaaaaatttaatttattttcttcatcttctcca 21435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University