View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6285_low_2 (Length: 447)
Name: NF6285_low_2
Description: NF6285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6285_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 6 - 433
Target Start/End: Original strand, 293572 - 293997
Alignment:
| Q |
6 |
caaaggtgtatgatgagaatgaataattgtattgcttttctagttatgtttatgatcctcaactcaactgatgcttaacttaatgaatactatacaatac |
105 |
Q |
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| T |
293572 |
caaaggtgtatgatgagaataattaattgtattgcttttctagttatgtttatgatcctcaactcaactgatgcttaacttaatgaatactatac----- |
293666 |
T |
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| Q |
106 |
aatacataccttgtcagatgaagcaaacttaaagaaataaaaaagaataatgggccttgctgtctcaagaggctgaacaagaattataaataaatgcttt |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |
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| T |
293667 |
aatacataccttgtcagatgaagcaaacttaaagaaataaaaaagaataatgggccttgctgtctcaagaggcagaacaagaattttaaataaatgcttt |
293766 |
T |
|
| Q |
206 |
gcttttaaaacataaaagtaacactcatatttaaggatggatttcatctcatctcatgtagtctaggttgttgtagttaatccaaacctttaagtcacat |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
293767 |
gcttttaaaacataaaagtaacactcatatttaaggatgaatttcatctcatctcatgtagtctaggttgttgtagttaatccaaacctttaagtcacat |
293866 |
T |
|
| Q |
306 |
gaatagtgccttgtgggacaagtacaactaattatttccaaccactcctattcctattacattagatatgacaacattccttaagatgaatctcac---t |
402 |
Q |
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||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
293867 |
gaatagtgccttgtgggacaagtgcaaccaattatttccaaccactcctattcctattacattagatatgacaacattccttaagatgaatctcactatt |
293966 |
T |
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| Q |
403 |
attattattatatccatatccataaagaaac |
433 |
Q |
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| T |
293967 |
attattattatatccatatccataaagaaac |
293997 |
T |
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