View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6285_low_3 (Length: 320)
Name: NF6285_low_3
Description: NF6285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6285_low_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 265; Significance: 1e-148; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 17 - 309
Target Start/End: Complemental strand, 1425831 - 1425539
Alignment:
| Q |
17 |
aaatttatgggacaataatacttgggtttacttggtgactgaagattacgtggatcttaacctacatctaaaccttctaatacttctatcaagttacata |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
1425831 |
aaatttatgggacaataatacttgggtttacttggtgactgaagattacttggatcttaacctacatctaaaccttctaatacttccatcaagttacata |
1425732 |
T |
|
| Q |
117 |
atgatgataatacacattggtgatattcatacttacagaagactcattcattgaatttatcatctcacactacataactagatatcatgcaacaacttgg |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| || |||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
1425731 |
atgatgataatacacattggtgatattcatacttacaaaagacttattcattgaattcattatctcacattacataactagatatcatgcaacaacttgg |
1425632 |
T |
|
| Q |
217 |
ctaattcttatccaaacccacaaatattcattatagtactgcttgtagagttttcaaataccttaagcattggcttgttcatggtctattctt |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1425631 |
ctaattcttatccaaacccacaaatattcattatagtactgcttgtagagttttcaaataccttaagcattggcttgttcatggtctattctt |
1425539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 17 - 291
Target Start/End: Complemental strand, 1447922 - 1447637
Alignment:
| Q |
17 |
aaatttatgggacaataatacttgggtttacttggtgactgaagattacgtggatcttaacctacatctaaaccttctaatacttctatcaagttacata |
116 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1447922 |
aaatttatgggacaatactacttaggtttacttggtgactgaagattacttggatcttaacctacatctaaaccttctaatacttctatcaagttacata |
1447823 |
T |
|
| Q |
117 |
atgatgataataca--cattggtgatattcatacttacagaagactcattcattgaatttatcatctcacactacataactagatatca--tgc------ |
206 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||| | |||||||| ||||||||||||||||| | | |
|
|
| T |
1447822 |
atgatgataatacacccattggtgatattcctacttacaaaagactcattcattgaattcagtatctcacattacataactagatatcaccttcatcagt |
1447723 |
T |
|
| Q |
207 |
-aacaacttggctaattcttatccaaacccacaaatattcattatagtactgcttgtagagttttcaaataccttaagcattggct |
291 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1447722 |
taacaacttagctaattcttatccaaacccacaaatattcattgtagtactgcttgtagagttttcaaataccttaagcattggct |
1447637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 17 - 183
Target Start/End: Complemental strand, 1470397 - 1470229
Alignment:
| Q |
17 |
aaatttatgggacaataatacttgggtttacttggtgactgaagattacgtggatcttaacctacatctaaaccttctaatacttctatcaagttacata |
116 |
Q |
| |
|
||||||||||| ||||| ||||| |||||||||| |||||||||||||| ||||||| |||||| ||| | ||||| ||||||||| ||||||||| ||| |
|
|
| T |
1470397 |
aaatttatggggcaatactacttaggtttacttgatgactgaagattacttggatctaaacctaaatcaagaccttataatacttccatcaagttatata |
1470298 |
T |
|
| Q |
117 |
atgatgataataca--cattggtgatattcatacttacagaagactcattcattgaatttatcatctca |
183 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||||||| ||||| | ||||||||||| || |||||| |
|
|
| T |
1470297 |
atgatgataatacacccattggtgatattcctacttacaaaagaccccttcattgaattcattatctca |
1470229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University