View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6285_low_9 (Length: 229)
Name: NF6285_low_9
Description: NF6285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6285_low_9 |
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| [»] chr8 (8 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 8 - 229
Target Start/End: Original strand, 6265489 - 6265710
Alignment:
| Q |
8 |
cgaagaaaatacgatcagttaggtagtttttcgcattgtaaacccacgagttgcaaacaaagtgaatggttccaacgtttgggatatcctcaagagtcaa |
107 |
Q |
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| T |
6265489 |
cgaagaaaatacgatcagttaggtagtttttcgcattgtaaacccacgagttgcaaacaaagtgaatggttccaacgtttgggatatcatcaagagtcaa |
6265588 |
T |
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| Q |
108 |
actcacaaggaggaactcagttgacataaagttcttaattttgaatgctccaggaattccaaagttgctatcatattcaaattcaatgctgaaagctgtt |
207 |
Q |
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| T |
6265589 |
actcacaaggaggaactcagttgacataaagttcttaattttgaatgctccaggaattccaaagttgctatcatattcaaattcaatgctgaaagctgtt |
6265688 |
T |
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| Q |
208 |
tgtttatctcccaatgttggca |
229 |
Q |
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| T |
6265689 |
tgtttatctcccaatgttggca |
6265710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 41 - 167
Target Start/End: Original strand, 6425551 - 6425677
Alignment:
| Q |
41 |
cattgtaaacccacgagttgcaaacaaagtgaatggttccaacgtttgggatatcctcaagagtcaaactcacaaggaggaactca-gttgacataaagt |
139 |
Q |
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| T |
6425551 |
cattgtaaacccaagagttgcaaacaaagttgatggttccatggtttggaacatcttcaagtgtcaaactcacaaggaagaactcatgttg-caaaaaat |
6425649 |
T |
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| Q |
140 |
tcttaattttgaatgctccaggaattcc |
167 |
Q |
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| T |
6425650 |
tctcaatatagaatgctcctggaattcc |
6425677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 34 - 118
Target Start/End: Original strand, 6364754 - 6364838
Alignment:
| Q |
34 |
tttttcgcattgtaaacccacgagttgcaaacaaagtgaatggttccaacgtttgggatatcctcaagagtcaaactcacaagga |
118 |
Q |
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| T |
6364754 |
tttttagcgttgtaaacccatgagttgcaaacaaagttgatggttccatggtttggaacatcttcaagagtcaagctgacaagga |
6364838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 229
Target Start/End: Original strand, 6364905 - 6364952
Alignment:
| Q |
182 |
attcaaattcaatgctgaaagctgtttgtttatctcccaatgttggca |
229 |
Q |
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| T |
6364905 |
attcaaattcaatactgaaagcattttgtttatctcccaatgttggca |
6364952 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 227
Target Start/End: Original strand, 6354007 - 6354192
Alignment:
| Q |
42 |
attgtaaacccacgagttgcaaacaaagtgaatggttccaacgtttgggatatcctcaagagtcaaactcacaaggaggaactcagttgacataaagttc |
141 |
Q |
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| T |
6354007 |
attgtaaatccatgagttgcagacaaagtggatggatccatggtttggaacatcttcaagtgtcaaactcacaaggaagaattcaccttgcataaaatta |
6354106 |
T |
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| Q |
142 |
ttaattttgaatgctccaggaattccaaagttgctatcatattcaaattcaatgctgaaagctgtttgtttatctcccaatgttgg |
227 |
Q |
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| T |
6354107 |
tcgatgtaaaaagctccgggaattcccatgttactgtcccattcaaaatgaatactgaaagcattttgtttgtctcccaatgttgg |
6354192 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 118
Target Start/End: Original strand, 6333441 - 6333525
Alignment:
| Q |
34 |
tttttcgcattgtaaacccacgagttgcaaacaaagtgaatggttccaacgtttgggatatcctcaagagtcaaactcacaagga |
118 |
Q |
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| T |
6333441 |
tttttagcattgtaaatccatgagttgcaaacaaagttgatggttccatggatgggaatatcttcaagcgtcaaacttacaagga |
6333525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 118
Target Start/End: Original strand, 7461017 - 7461093
Alignment:
| Q |
42 |
attgtaaacccacgagttgcaaacaaagtgaatggttccaacgtttgggatatcctcaagagtcaaactcacaagga |
118 |
Q |
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| T |
7461017 |
attgtgaatccatgagttgcaaacaaagttgatggttccatggtttggaacatcttcaagtgtcaaactcacaagga |
7461093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 116
Target Start/End: Original strand, 6290760 - 6290846
Alignment:
| Q |
30 |
gtagtttttcgcattgtaaacccacgagttgcaaacaaagtgaatggttccaacgtttgggatatcctcaagagtcaaactcacaag |
116 |
Q |
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| T |
6290760 |
gtagttttgagcattgtaaatccatgagttgcaaacaaagttgatggttccatggttgggaacatcttcaagggtcaaacttacaag |
6290846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 40 - 167
Target Start/End: Original strand, 42694737 - 42694864
Alignment:
| Q |
40 |
gcattgtaaacccacgagttgcaaacaaagtgaatggttccaacgtttgggatatcctcaagagtcaaactcacaaggaggaactcagttgacataaagt |
139 |
Q |
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| T |
42694737 |
gcattataaatccaggagttgcatacaaagtagatgcttccatgatttggaatgtcttcaagagtcaaactcacaaggaaaaactcagtttgcataaagt |
42694836 |
T |
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| Q |
140 |
tcttaattttgaatgctccaggaattcc |
167 |
Q |
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| T |
42694837 |
tcttgatgtaaaatgctccaggaattcc |
42694864 |
T |
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