View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6286_high_1 (Length: 458)
Name: NF6286_high_1
Description: NF6286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6286_high_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 22 - 445
Target Start/End: Complemental strand, 6990275 - 6989852
Alignment:
| Q |
22 |
ctcggtgtctcctcctacctttttccatcgccatcatgagcgatgaacaacgagaaccaccacagccttctttctcgaggtaataccaccttttcttaaa |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6990275 |
ctcggtgtctcctcctacctttttccatcgccatcatgagcgatgaacaacgagaaccaccacagccttctttctcgaggtaataccaccttttcttaaa |
6990176 |
T |
|
| Q |
122 |
cattttgagttcatttctttatacgtgcatgcatgcatgcaacgttatttccatctcattcattaattaatatggtattatatctgtaatgtttccttaa |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6990175 |
cattttgagttcatttctttatacgtgcatgcatgcatgcaacgttatttccatctcattcattaattaatatggtattatatctgtaatgtttccttaa |
6990076 |
T |
|
| Q |
222 |
taataatctatattgattttacatgcaagtaagttgacnnnnnnnngcttaatgtaccattaatttttatacatgtgtattgattgatgttatgtacttg |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
6990075 |
taataatctatattgattttacatgcaagtaagttgacttttttttgcttaatgtaccattaatttttatacatgtgtattgattgatgttgtgtacttg |
6989976 |
T |
|
| Q |
322 |
tgttgatatattttgtttcggacatgtctttgtgtatgtttggtttcggttccacgtttgaaaaatacaaaatcatttcgagattcatagaattgatttg |
421 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6989975 |
tgttgatatattttgtttcggacatgtctttgtgtatgtttggtttcggttccacgtttgaaaaatacaaaatcatttcgagattcatagaattgatttt |
6989876 |
T |
|
| Q |
422 |
gacaaatttatatcctctcgagta |
445 |
Q |
| |
|
|||| |||||||||||||||||| |
|
|
| T |
6989875 |
gacacgtttatatcctctcgagta |
6989852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University