View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6286_high_2 (Length: 398)
Name: NF6286_high_2
Description: NF6286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6286_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 62 - 335
Target Start/End: Original strand, 14571904 - 14572177
Alignment:
| Q |
62 |
gccaattcttaatcaactttcaaatgcatctcaaaacgaagcattttcttagtgaaaaatacaaagtacttaattggttaattgcttttgttataaacaa |
161 |
Q |
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| T |
14571904 |
gccaattcttaatcaactttgaaatgcatctcaaaacaaagcattttcttagtgaaaaatacaaagtacttaattggttaattgcttttgttataaacaa |
14572003 |
T |
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| Q |
162 |
tggtagatcccaatgaactgaatattgtttcgatagaatggaagaagtaagtatatcaaagtataaaatgagacttatatactctataagtattttctta |
261 |
Q |
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| T |
14572004 |
tggtagagcccaatgaactgaatattgtttcgatagaatggaagaagtaagtatatcaaagtataaaatgagacttatatactctaaaagtattttctta |
14572103 |
T |
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| Q |
262 |
ggattaattagattcaatatttaatatctaatatgatattagagtttatcgattatgaccatccataatttata |
335 |
Q |
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| T |
14572104 |
ggattaattagattcaatatttaatatctaatatgatattagagtttatcgattatgactatctataatttata |
14572177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 327 - 379
Target Start/End: Original strand, 14572481 - 14572533
Alignment:
| Q |
327 |
taatttatatacatgcattaaatctaataacgttgagcatgagatggtgtatt |
379 |
Q |
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| T |
14572481 |
taatttatatacatgcatcaaatctaataacgttgagcatgagaaggtgtatt |
14572533 |
T |
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