View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6286_high_4 (Length: 277)
Name: NF6286_high_4
Description: NF6286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6286_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 252; Significance: 1e-140; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 30407376 - 30407635
Alignment:
| Q |
1 |
gtggagtgtgcgaggtacttgcatgatcaagagagggtgcacatgcagcatatgaagattcttccttcacctcctgtttaggccttaagaatcctgtatc |
100 |
Q |
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| T |
30407376 |
gtggagtgtgtgaggtacttgcatgatcaagagaaggtgcacatgcagcatatgaagattcttccttcacctcctgtttaggccttaagaatcctgtatc |
30407475 |
T |
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| Q |
101 |
catatccctcaactgctgtcctgaaagataagactgaatagaactcataggtcttgcatagttaaaattaattccagctagagcataatttccagacgag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30407476 |
catatccctcaactgctgtcctgaaagataagactgaatagaactcataggtcttgcatagttaaaattaattccagctagagcataatttccagacgag |
30407575 |
T |
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| Q |
201 |
ggaagattcagcggtagcggcatttgaaattcagggaacattgaagcaataggtcctgtt |
260 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30407576 |
ggaagattcagcggtagcggcatttgaaattcagggaacattgaagcaataggtcctgtt |
30407635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 30393782 - 30394041
Alignment:
| Q |
1 |
gtggagtgtgcgaggtacttgcatgatcaagagagggtgcacatgcagcatatgaagattcttccttcacctcctgtttaggccttaagaatcctgtatc |
100 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||| | ||||||||| |||||| |
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| T |
30393782 |
gtggagtgtgtgaggtacttgcatgatcaagagagggtgcacatgcagcatatgaagattcttcattcagcgcctgtttgccctttaagaatcttgtatc |
30393881 |
T |
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| Q |
101 |
catatccctcaactgctgtcctgaaagataagactgaatagaactcataggtcttgcatagttaaaattaattccagctagagcataatttccagacgag |
200 |
Q |
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| T |
30393882 |
catatccctcaactgctgccctgaaaggtaagactggatagaatttataggtttttcatagttaaaattaattccagctagagaataatttccagacgag |
30393981 |
T |
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| Q |
201 |
ggaagattcagcggtagcggcatttgaaattcagggaacattgaagcaataggtcctgtt |
260 |
Q |
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||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||| |
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| T |
30393982 |
ggaagattcagcggtggtggcatttgaaattcaggaaacattgaagcaataggtcctgtt |
30394041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 30393728 - 30393781
Alignment:
| Q |
1 |
gtggagtgtgcgaggtacttgcatgatcaagagagggtgcacatgcagcatatg |
54 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30393728 |
gtggagtgtgtgaggtacttgcatgatcaagagagggtgcacatgcagcatatg |
30393781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 30407322 - 30407375
Alignment:
| Q |
1 |
gtggagtgtgcgaggtacttgcatgatcaagagagggtgcacatgcagcatatg |
54 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30407322 |
gtggagtgtgtgaggtacttgcatgatcaagagagggtgcacatgcagcatatg |
30407375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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