View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6286_high_5 (Length: 275)
Name: NF6286_high_5
Description: NF6286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6286_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 17 - 265
Target Start/End: Original strand, 3030567 - 3030822
Alignment:
| Q |
17 |
aagaggtactgacttgaatgccctatagtttccaacattgttcaaatgttcattctccaacctgttcaatttaaaacatcaagttttgccactaactgaa |
116 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3030567 |
aagaggtaccgacttgaatgccctatagtttccaacattgttcaaatgttcattctccaacctgttcaatttaaaacatcaagttttgccactaactgaa |
3030666 |
T |
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| Q |
117 |
gtaact-------ataacaaactgtaacagaatactacagcagtatgatactgttagaattcgaattttagttttcaaggaaacagataaaattaacaca |
209 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3030667 |
gtaactaaaaactataacaaactgtaacagaatactacagcagtatgatactgttagaattcgaattttagttttcaaggaaacagataaaattaacaca |
3030766 |
T |
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| Q |
210 |
aaaacacaaatgattgatcgaaaatatattcataagggaattaccagaaacctatg |
265 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
3030767 |
aaaacacaaatgattgatcgaaattatattcataagggaattaccagaaacctatg |
3030822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 17 - 95
Target Start/End: Original strand, 3014866 - 3014944
Alignment:
| Q |
17 |
aagaggtactgacttgaatgccctatagtttccaacattgttcaaatgttcattctccaacctgttcaatttaaaacat |
95 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | ||||||| |
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| T |
3014866 |
aagaggtactgacttgaatgccctatagtttccaacattgttcaaatgctcattctccaacctgttcaactcaaaacat |
3014944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 17 - 85
Target Start/End: Original strand, 2996271 - 2996339
Alignment:
| Q |
17 |
aagaggtactgacttgaatgccctatagtttccaacattgttcaaatgttcattctccaacctgttcaa |
85 |
Q |
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| T |
2996271 |
aagaggtactgacttaaatgccctatagtttccaacattgttgaaatgctcattctccaacctgttcaa |
2996339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 101 - 264
Target Start/End: Original strand, 11327702 - 11327861
Alignment:
| Q |
101 |
tttgccactaactgaagtaacta----taacaaactgtaacagaatactacagcagtatgatactgttagaattcgaattttagttttcaaggaaacaga |
196 |
Q |
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||||||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||| || ||||||| ||||||||||||||||| |||| || |
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| T |
11327702 |
tttgccactaactgatgtaactaaatataacaaactgtaacagaatactacagcagtttgatattgctagaattggaattttagttttcaagaaaactga |
11327801 |
T |
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| Q |
197 |
taaaattaacacaaaaacacaaatgattgatcgaaaatatattcataagggaattaccagaaacctat |
264 |
Q |
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| T |
11327802 |
taaaattaacacaaaca--------attgatcaagaatatattcataagcggattaccagaaacctat |
11327861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 17 - 101
Target Start/End: Original strand, 11327210 - 11327294
Alignment:
| Q |
17 |
aagaggtactgacttgaatgccctatagtttccaacattgttcaaatgttcattctccaacctgttcaatttaaaacatcaagtt |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||||| |
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| T |
11327210 |
aagaggtactgacttgaatgccctatagtttccaacattgttcaaatgctcattctccaacctgttcaagtcaaaacatcaagtt |
11327294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 101 - 264
Target Start/End: Complemental strand, 20063712 - 20063553
Alignment:
| Q |
101 |
tttgccactaactgaagtaacta----taacaaactgtaacagaatactacagcagtatgatactgttagaattcgaattttagttttcaaggaaacaga |
196 |
Q |
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||||||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||| || ||||||| ||||||||||||||||| |||| || |
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| T |
20063712 |
tttgccactaactgatgtaactaaatataacaaactgtaacagaatactacagcagtttgatattgctagaattggaattttagttttcaagaaaactga |
20063613 |
T |
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| Q |
197 |
taaaattaacacaaaaacacaaatgattgatcgaaaatatattcataagggaattaccagaaacctat |
264 |
Q |
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||||||||||||||| | ||||||| | |||||||||||||| | |||||||||||||||| |
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| T |
20063612 |
taaaattaacacaaaca--------attgatcaagaatatattcataagcggattaccagaaacctat |
20063553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 17 - 101
Target Start/End: Complemental strand, 20064204 - 20064120
Alignment:
| Q |
17 |
aagaggtactgacttgaatgccctatagtttccaacattgttcaaatgttcattctccaacctgttcaatttaaaacatcaagtt |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||||| |
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| T |
20064204 |
aagaggtactgacttgaatgccctatagtttccaacattgttcaaatgctcattctccaacctgttcaagtcaaaacatcaagtt |
20064120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 18545932 - 18545872
Alignment:
| Q |
19 |
gaggtactgacttgaatgccctatagtttccaacattgttcaaatgttcattctccaacct |
79 |
Q |
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|||| |||||||||||||| | |||||||||||||||||||| || |||||||||||||| |
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| T |
18545932 |
gagggactgacttgaatgcacggtagtttccaacattgttcaagtgctcattctccaacct |
18545872 |
T |
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