View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6286_low_4 (Length: 278)
Name: NF6286_low_4
Description: NF6286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6286_low_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 7 - 276
Target Start/End: Complemental strand, 31351393 - 31351124
Alignment:
| Q |
7 |
gagatgaacagggaaaaaccgttattggcaacaaaggggtatgtttaatgcttcacatgtttccagtggacagtgtcttctactgtttaaatctacacca |
106 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
31351393 |
gagacgaacagggaaaaaccgttattggcaacaaaggggtatgtttaatgcttcacatgtttccagtggacagtgtcttctactgtttcaatctacacca |
31351294 |
T |
|
| Q |
107 |
tgtggcatgctgtctcaaatatattcacatttggtggtcttaaatatttcactcaattaaagagtattatccataaaatacatttcaatccatcgaaaaa |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31351293 |
tgtggcatgctgtctcaaatatattcacatttggtggtcttaaatatttcactcaattaaagagtattatccataaaatacatttcaatccatcgaaaaa |
31351194 |
T |
|
| Q |
207 |
ataacatacatttcaattaannnnnnnaatgatatcgcaacatttttcttagtgacttcttttatcacaa |
276 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||| |
|
|
| T |
31351193 |
ataacatacatttcaattaatttttttaatgatatcacaacattttttttagtgacttcttttatcacaa |
31351124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University