View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6287_high_1 (Length: 701)
Name: NF6287_high_1
Description: NF6287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6287_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 275; Significance: 1e-153; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 21 - 322
Target Start/End: Original strand, 23385889 - 23386193
Alignment:
| Q |
21 |
ttttatcaatgtctaatcaatttgacgaatcatagttttaatacataaacatattgaatacttgtaataagatgatatatat---gagtttgaactatgg |
117 |
Q |
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| T |
23385889 |
ttttatcaatgtctaatcaatttaacgaatcatagttttaatacataaacatattgaatacttgtaataagatgatatatataatgagtttgaactatgg |
23385988 |
T |
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| Q |
118 |
tatagctattgaactgcaaaatttggtaaggtcatacaaggtcaatacagaataatttgaagaaaattgcggtcaaatgcaaatatagtataacattaat |
217 |
Q |
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| T |
23385989 |
tatagctattgaactgcaaaatttggtaaggtcatacaaggtcaatacaaaataatttgaagaaaattgcggtcaaatgcaaatatagtataacattaat |
23386088 |
T |
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| Q |
218 |
atggattatgtttcgatagtattatgtttcaaataacatatcaaagattgaacatgtgagacttgttgatcaatcctcaattgattcaaccatgtttgaa |
317 |
Q |
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| T |
23386089 |
ctggattatatttcgatagtattatgtttcaaataacatatcaaagattgaacatgtgagacttgttgatcaatcctcaattgattcaaccatgtttgaa |
23386188 |
T |
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| Q |
318 |
gtgga |
322 |
Q |
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| T |
23386189 |
gtgga |
23386193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 375 - 633
Target Start/End: Original strand, 23386246 - 23386505
Alignment:
| Q |
375 |
cgagcttgattctattctatatctcaattcaatccttttcaatgagaataaaatacaatcaaaataaaaccaatcaataaactaattaattttcagttaa |
474 |
Q |
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| T |
23386246 |
cgagcttgattctattctatatctcaattcaatcctgcccaatgagaataaaatacaatcaaaataaaaccaatcattaaactaattaatttttagttaa |
23386345 |
T |
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| Q |
475 |
atgaatagaacaccaatcggttcggtctgatttttaaaacactaatcccaaaaacatcaaagattttggcatcactgtccatatcatagttgtggacc-t |
573 |
Q |
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| T |
23386346 |
atgaatagaacaccgatcggttcggtctgatttttaaaacattagtcccaaaaacatcaaagattttagcatcactgtccatatcatagttgtggacctt |
23386445 |
T |
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| Q |
574 |
tttttctaaattgtgtttcttagtggaaaagaagtggacttctaattttgtaaaggtggg |
633 |
Q |
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| T |
23386446 |
tttttctaaattgtgtttattagtggaaaagaagtggacttctaattttgtaaaggtggg |
23386505 |
T |
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