View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6287_high_12 (Length: 306)
Name: NF6287_high_12
Description: NF6287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6287_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 17 - 284
Target Start/End: Complemental strand, 52168030 - 52167748
Alignment:
| Q |
17 |
gatcatataatttaataatatatggtctattacattcctttttggtcctaatcataaaaacaa------------------gaataaagagcgtattaaa |
98 |
Q |
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| T |
52168030 |
gatcatataatttaata---tatggtctattacattcctttttggtcctaatcataaaaacaattgtgactattaaaacaagaataaagagcgtattaaa |
52167934 |
T |
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| Q |
99 |
tatattatgattctgttaaatcattatggatttgtggcctgaaccgcattaaatatgtaaatcatgtggtatgattgtcatggctagttgcctgtttcgt |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
52167933 |
tatattatgattctgttaaatcattatggatttgtggcctgaaccgcgttaaatatgtaaattatgtggtatgattgtcatggctagttgcctgtttcgt |
52167834 |
T |
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| Q |
199 |
cttatagatacatatcttactatctcatttaaatataacttgaagaccaatttatcccttcaaaaatctgcaagacccaaaatagt |
284 |
Q |
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| T |
52167833 |
cttatagatacatatcttactatctcatttaaatataacgtgaagaccaatttatcccttcaaaaatctgcaagacccaaaatagt |
52167748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 73 - 201
Target Start/End: Complemental strand, 19327719 - 19327593
Alignment:
| Q |
73 |
aaaacaagaataaagagcgtattaaatatattatgattctgttaaatcattatggatttgtggcctgaaccgcattaaatatgtaaatcatgtggtatga |
172 |
Q |
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||||||| |||||| | |||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |
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| T |
19327719 |
aaaacaacaataaataccgtattaaatat--tatgattatgttaaatcattatggatttgtggcctgaacgacattaaatatgtaaatcatgtgctatga |
19327622 |
T |
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| Q |
173 |
ttgtcatggctagttgcctgtttcgtctt |
201 |
Q |
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| T |
19327621 |
ctgtcatggctagttgcatgtttcgtctt |
19327593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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