View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6287_high_13 (Length: 293)
Name: NF6287_high_13
Description: NF6287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6287_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 19 - 274
Target Start/End: Complemental strand, 31820280 - 31820027
Alignment:
| Q |
19 |
aacaaagttaagttagatgctcatatcacgtattgtactggaaagtccttgcttaattatcaaactgaacaacaaagttgtatataattatggctcggaa |
118 |
Q |
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| T |
31820280 |
aacaaagttaagtt-gatgctcatatcacgtattgtattggaaagtccttgcttaattatcaa-ctgaacaacaaagttgtatataattatggctcggaa |
31820183 |
T |
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| Q |
119 |
tttttaatattccaaactacctaaagaaaaatgttcaatgattaatgtgttgctaagatatttggccttcagtttttaattcaattttcctagaaagatt |
218 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
31820182 |
tttttaatattccaaactacctaaagagaaatgttcaatgattaatgtgttgttaagatatttggccttcagtttttaattcaattttcctaaaaagatt |
31820083 |
T |
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| Q |
219 |
tatttgtacaaaaatggtatgtacactattcaaataacaagtgaataccatttgcc |
274 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31820082 |
tatttgtacaaaaatggtatgtacactattcaaataacaagtgaataccatttgcc |
31820027 |
T |
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