View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6287_high_19 (Length: 222)
Name: NF6287_high_19
Description: NF6287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6287_high_19 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 2 - 222
Target Start/End: Complemental strand, 49684720 - 49684500
Alignment:
| Q |
2 |
ctagggacgactttcctttgctattacgaacaagcagaatgggtgcattcttcgcaagtcacaaatgttgaactatgctcaggtaattctaattccttgt |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49684720 |
ctagggacgactttcctttgctattacgaacaggcagaatggatgcattcttcgcaagtcacaaatgttgaactatgctcaggtaattctaattccttgt |
49684621 |
T |
|
| Q |
102 |
gactcaattactactaggaccatttataagagaatgaactgaaataaaatttgataatgtagtacatagttgtaattctgctgtggctaaatatgaatat |
201 |
Q |
| |
|
||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49684620 |
aactaaattactactaggactatttatacgagaatgaactgaaataaaatttgataatgtagtacatagttgtaattctgctgtggctaaatatgaatat |
49684521 |
T |
|
| Q |
202 |
tagcaactttaattatgcaat |
222 |
Q |
| |
|
|| |||||||||||||||||| |
|
|
| T |
49684520 |
taacaactttaattatgcaat |
49684500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University