View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6287_low_10 (Length: 323)
Name: NF6287_low_10
Description: NF6287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6287_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 84; Significance: 7e-40; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 18 - 101
Target Start/End: Complemental strand, 35907232 - 35907149
Alignment:
| Q |
18 |
ccaacttgtaacaaatctaactcattcaattacgatcctcactccctatcactgcttctcaaccatgtaaacttaacgttcatg |
101 |
Q |
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| T |
35907232 |
ccaacttgtaacaaatctaactcattcaattacgatcctcactccctatcactgcttctcaaccatgtaaacttaacgttcatg |
35907149 |
T |
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Target: chr1; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 224 - 312
Target Start/End: Complemental strand, 35907026 - 35906937
Alignment:
| Q |
224 |
taataacaatcaaaacttcaccttaattttt-gttcttgcctggtttggaacatgttccaccaatccaggtaggtaatttctacattcat |
312 |
Q |
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| T |
35907026 |
taataacaatcaaaacttcaccttaattttttgttcttgcctggtttggaacatgttccaccaatccaggtaggtaatttctacattcat |
35906937 |
T |
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