View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6287_low_14 (Length: 271)
Name: NF6287_low_14
Description: NF6287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6287_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 16 - 258
Target Start/End: Complemental strand, 46024150 - 46023900
Alignment:
| Q |
16 |
catcttctgctctatcaaaagtacctaaccatagtcttagtttctgtgatgagtctttgatctcagctatccatcttcctgatggcctttgtctcactcc |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
46024150 |
catcttctgctctatcaaaagtacctaaccatagtcttagtttctgtgatgagtctttgatctcagctatccatcttcctgatggcctttgcctcactcc |
46024051 |
T |
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| Q |
116 |
tagatactttttctgatgacctttgtttgatgtttttggaatcttcttaatagtgttcctttctttgttctcatagggtttgtct--------agggatc |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |
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| T |
46024050 |
tagatactttttctgatgacctttgtttgatgtttttggaatcttcttaatagtgtttctttctttgttctcatagggtttgtctatttcatgagggatc |
46023951 |
T |
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| Q |
208 |
aatgaaatattgttgtttttgtgagtttggtgtggaaattttaaggtgtct |
258 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46023950 |
aaagaaatattgttgtttttgtgagtttggtgtggaaattttaaggtgtct |
46023900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 16 - 258
Target Start/End: Original strand, 46265217 - 46265467
Alignment:
| Q |
16 |
catcttctgctctatcaaaagtacctaaccatagtcttagtttctgtgatgagtctttgatctcagctatccatcttcctgatggcctttgtctcactcc |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
46265217 |
catcttctgctctatcaaaagtacctaaccatagtcttagtttctgtgatgagtctttgatctcagctatccatcttcctgatggcctttgcctcactcc |
46265316 |
T |
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| Q |
116 |
tagatactttttctgatgacctttgtttgatgtttttggaatcttcttaatagtgttcctttctttgttctcatagggtttgtct--------agggatc |
207 |
Q |
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| T |
46265317 |
tagatactttttctgatgacctttgtttgatgtttttggaatcttcttaatagtgtttctttctttgttctcatagggtttgtctatttcatgagggatc |
46265416 |
T |
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| Q |
208 |
aatgaaatattgttgtttttgtgagtttggtgtggaaattttaaggtgtct |
258 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46265417 |
aaagaaatattgttgtttttgtgagtttggtgtggaaattttaaggtgtct |
46265467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 63 - 112
Target Start/End: Original strand, 12508680 - 12508729
Alignment:
| Q |
63 |
gatgagtctttgatctcagctatccatcttcctgatggcctttgtctcac |
112 |
Q |
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|||||||||||||||||||||| |||||| |||||||||||||||||||| |
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| T |
12508680 |
gatgagtctttgatctcagctacccatctacctgatggcctttgtctcac |
12508729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 69 - 112
Target Start/End: Complemental strand, 3160268 - 3160225
Alignment:
| Q |
69 |
tctttgatctcagctatccatcttcctgatggcctttgtctcac |
112 |
Q |
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||||| |||||||||| ||||||||||||||||||||||||||| |
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| T |
3160268 |
tcttttatctcagctacccatcttcctgatggcctttgtctcac |
3160225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 106
Target Start/End: Original strand, 33274344 - 33274382
Alignment:
| Q |
68 |
gtctttgatctcagctatccatcttcctgatggcctttg |
106 |
Q |
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||||||||||||||||| |||||| |||||||||||||| |
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| T |
33274344 |
gtctttgatctcagctacccatctccctgatggcctttg |
33274382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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