View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6287_low_18 (Length: 244)
Name: NF6287_low_18
Description: NF6287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6287_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 31820506 - 31820717
Alignment:
| Q |
1 |
ccactcaactacaaaaaagaagaaaattctctcaccaccatccatcaataatcatcaataatnnnnnnncattccaatataacttttcacactctcgaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |
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| T |
31820506 |
ccactcaactacaaaaaagaagaaaattctctcaccaccatccatcaataatca---ataataaaaaaacattccaatataacttttcacactctcgaat |
31820602 |
T |
|
| Q |
101 |
atcacttgagatatacatatccggnnnnnnntaagaagcttatattttctagaatttcataagtatgtgatttttcacaaattttggatgcaacctgaaa |
200 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31820603 |
atcacttgagatatacatatccggaaaaaa-taagaagcttatattttctagaatttcataagtatgtgatttttcacaaattttggatgcaacctgaaa |
31820701 |
T |
|
| Q |
201 |
ctgaaagacaagaact |
216 |
Q |
| |
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|||||||||||||||| |
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| T |
31820702 |
ctgaaagacaagaact |
31820717 |
T |
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