View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6287_low_2 (Length: 564)

Name: NF6287_low_2
Description: NF6287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6287_low_2
NF6287_low_2
[»] chr6 (8 HSPs)
chr6 (17-554)||(5444204-5444742)
chr6 (399-554)||(5184705-5184860)
chr6 (396-554)||(5264094-5264252)
chr6 (341-554)||(5393215-5393428)
chr6 (395-547)||(5394451-5394603)
chr6 (347-542)||(5331573-5331768)
chr6 (496-547)||(5358080-5358131)
chr6 (504-541)||(5093048-5093085)
[»] chr4 (3 HSPs)
chr4 (156-251)||(41688503-41688598)
chr4 (470-541)||(6501157-6501228)
chr4 (156-237)||(54064642-54064723)
[»] chr3 (1 HSPs)
chr3 (156-249)||(24133636-24133729)
[»] scaffold0864 (2 HSPs)
scaffold0864 (458-554)||(4517-4613)
scaffold0864 (349-437)||(4676-4764)
[»] chr7 (2 HSPs)
chr7 (156-238)||(30575966-30576048)
chr7 (156-248)||(28199356-28199448)
[»] chr1 (1 HSPs)
chr1 (156-218)||(42335795-42335857)
[»] chr2 (1 HSPs)
chr2 (469-554)||(22589029-22589114)


Alignment Details
Target: chr6 (Bit Score: 491; Significance: 0; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 17 - 554
Target Start/End: Complemental strand, 5444742 - 5444204
Alignment:
Q  17 acattcatatataaatacatgctcatatatgtcacaagtagaggggatgcttcaacaagaaaactatagttgtatgagtgtgtgtaagttggaatgttta 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5444742 acattcatatataaatacatgctcatatatgtcacaagtagaggggatgcttcaacaagaaaactatagttgtatgagtgtgtgtaagttggaatgttta 5444643  T
Q  117 caaaaagcaaatgtcaatatgcaaaaaacgaccctaatcttgaattaagttgaacaacttggtcattctgttaactt-atatctaatttactgtcacatt 215  Q
    | |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| | |||||||||||||||||||| |    
T  5444642 ccaaaagcaattgtcaatatgcaaaaaacgaccctaattttgaattaagttgaacaacttggccattctgttaacatgatatctaatttactgtcacact 5444543  T
Q  216 agtccttaaattatatcgcttactagcaaattagtctatacaagttaagagaaagaccaagctgcaagttgcttggtgtcattcaaactctgggcctttt 315  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  5444542 agtccttaaattatatcgcttactagcaaattagtccatacaagttaagagaaagaccaagctgcaagttgcttggtgtcattgaaactctgggcctttt 5444443  T
Q  316 tggcctacttgaaaatctgaaaagaagtagttgttgaatgaaattacccggacttcactattggaaaccctgcgatgtttgctgcctcacgaagagcctt 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5444442 tggcctacttgaaaatctgaaaagaagtagttgttgaatgaaattacccggacttcactattggaaaccctgcgatgtttgctgcctcacgaagagcctt 5444343  T
Q  416 tttccaacttagcaccaatttctccttgtttggaactttattcaaaagacgttgaaaagctattccaaactttcctctcggattacgcacttcagaggga 515  Q
    ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5444342 tttccaacttagcaccaatttctccttttttggaactttcttcaaaagacgttgaaaagctattccaaactttcctctcggattacgcacttcagaggga 5444243  T
Q  516 tctacacggtagaacactggcacaaccacttgtcctatg 554  Q
    |||||||||||||||||||||||||||||||||||||||    
T  5444242 tctacacggtagaacactggcacaaccacttgtcctatg 5444204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 399 - 554
Target Start/End: Original strand, 5184705 - 5184860
Alignment:
Q  399 gcctcacgaagagcctttttccaacttagcaccaatttctccttgtttggaactttattcaaaagacgttgaaaagctattccaaactttcctctcggat 498  Q
    |||||||||||||||| | |||||| ||||||||||| ||||| ||||  || ||| |||||||||| ||||||||||||||||||||  ||| || |||    
T  5184705 gcctcacgaagagcctctctccaacgtagcaccaattcctcctcgtttaaaattttgttcaaaagactttgaaaagctattccaaactcgcctgtctgat 5184804  T
Q  499 tacgcacttcagagggatctacacggtagaacactggcacaaccacttgtcctatg 554  Q
     ||| ||||||||||| |||||| ||||||||||||| ||||| ||||||||||||    
T  5184805 gacgtacttcagaggggtctacatggtagaacactggaacaacaacttgtcctatg 5184860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 396 - 554
Target Start/End: Original strand, 5264094 - 5264252
Alignment:
Q  396 gctgcctcacgaagagcctttttccaacttagcaccaatttctccttgtttggaactttattcaaaagacgttgaaaagctattccaaactttcctctcg 495  Q
    ||||||| ||||||||||| | |||||||| ||||||||| || || | ||| || ||| |||||||||  |||||||| ||||||||||| |||| ||     
T  5264094 gctgcctgacgaagagcctctctccaactttgcaccaattccttctcgattgaaattttgttcaaaagattttgaaaagatattccaaactctcctgtct 5264193  T
Q  496 gattacgcacttcagagggatctacacggtagaacactggcacaaccacttgtcctatg 554  Q
    ||| |||||||||||| || |||| | ||||||||| ||||||||||  ||||||||||    
T  5264194 gatgacgcacttcagatggttctaaatggtagaacaatggcacaaccttttgtcctatg 5264252  T

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Target: chr6; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 341 - 554
Target Start/End: Complemental strand, 5393428 - 5393215
Alignment:
Q  341 agtagttgttgaatgaaattacccggacttcactattggaaaccctgcgatgtttgctgcctcacgaagagcctttttccaacttagcaccaatttctcc 440  Q
    |||| |||||||| ||||||||| ||| |||| ||||  ||||||||| ||| | ||||||  |||||||||   | ||||||||||| | |||| | ||    
T  5393428 agtaattgttgaacgaaattacctggaattcagtattaaaaaccctgctatgctagctgcccgacgaagagctgctctccaacttagctctaattccacc 5393329  T
Q  441 ttgtttggaactttattcaaaagacgttgaaaagctattccaaactttcctctcggattacgcacttcagagggatctacacggtagaacactggcacaa 540  Q
    ||||||| |  ||| ||||||| || |||||||| ||||||||||| |||| || ||| |||||||||||  ||  ||||| |||||||||| || ||||    
T  5393328 ttgtttgaagttttgttcaaaaaactttgaaaagatattccaaactctcctttctgataacgcacttcagtaggggctacatggtagaacaccggaacaa 5393229  T
Q  541 ccacttgtcctatg 554  Q
    |||||| |||||||    
T  5393228 ccacttctcctatg 5393215  T

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Target: chr6; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 395 - 547
Target Start/End: Complemental strand, 5394603 - 5394451
Alignment:
Q  395 tgctgcctcacgaagagcctttttccaacttagcaccaatttctccttgtttggaactttattcaaaagacgttgaaaagctattccaaactttcctctc 494  Q
    ||||||| |||||||||||| ||||||| ||||| |||||| | ||| ||||  || | | |||||||||| || ||| ||  |||||||||  ||| ||    
T  5394603 tgctgccacacgaagagcctctttccaatttagcgccaattccacctcgtttaaaattctgttcaaaagactttcaaacgcccttccaaactcacctttc 5394504  T
Q  495 ggattacgcacttcagagggatctacacggtagaacactggcacaaccacttg 547  Q
     |||| ||||||||||||||||||||| ||||||||||||| |||||||||||    
T  5394503 tgattgcgcacttcagagggatctacatggtagaacactggaacaaccacttg 5394451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 347 - 542
Target Start/End: Original strand, 5331573 - 5331768
Alignment:
Q  347 tgttgaatgaaattacccggacttcactattggaaaccctgcgatgtttgctgcctcacgaagagcctttttccaacttagcaccaatttctccttgttt 446  Q
    ||||||||||| |||||  ||||| | ||||  |||||||   ||||| ||||| | ||||||||||| | |||||||| ||||||||| ||||| ||||    
T  5331573 tgttgaatgaatttaccgtgacttgagtatttcaaacccttttatgttagctgcatgacgaagagcctctctccaactttgcaccaattgctcctcgttt 5331672  T
Q  447 ggaactttattcaaaagacgttgaaaagctattccaaactttcctctcggattacgcacttcagagggatctacacggtagaacactggcacaacc 542  Q
    | || ||| ||||||| || ||||||   | ||||||| | |||| || ||| |||||||| ||| || |||| | ||||||||||||||||||||    
T  5331673 gaaattttgttcaaaaaactttgaaataattttccaaaatctcctgtctgatgacgcactttagatggttctaaatggtagaacactggcacaacc 5331768  T

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Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 496 - 547
Target Start/End: Original strand, 5358080 - 5358131
Alignment:
Q  496 gattacgcacttcagagggatctacacggtagaacactggcacaaccacttg 547  Q
    ||||||| |||||||| |||||||||| |||||||||||||| ||| |||||    
T  5358080 gattacgtacttcagatggatctacaccgtagaacactggcaaaacaacttg 5358131  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 504 - 541
Target Start/End: Complemental strand, 5093085 - 5093048
Alignment:
Q  504 acttcagagggatctacacggtagaacactggcacaac 541  Q
    ||||||||||||||||||  ||||||||||||||||||    
T  5093085 acttcagagggatctacatcgtagaacactggcacaac 5093048  T

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Target: chr4 (Bit Score: 44; Significance: 9e-16; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 156 - 251
Target Start/End: Complemental strand, 41688598 - 41688503
Alignment:
Q  156 ttgaattaagttgaacaacttggtcattctgttaacttatatctaatttactgtcacattagtccttaaattatatcgcttactagcaaattagtc 251  Q
    |||||||| || || |||||||||  |||| ||||||| ||||||||||||||||| ||||| ||  |||||||||  ||||||||||||||||||    
T  41688598 ttgaattatgtcgagcaacttggttcttctattaacttgtatctaatttactgtcaaattagcccccaaattatattacttactagcaaattagtc 41688503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 470 - 541
Target Start/End: Original strand, 6501157 - 6501228
Alignment:
Q  470 aaaagctattccaaactttcctctcggattacgcacttcagagggatctacacggtagaacactggcacaac 541  Q
    ||||||| |||||||||| ||| || ||| ||| |||||||||||||||||   ||||||||||||||||||    
T  6501157 aaaagcttttccaaacttacctttctgatgacgtacttcagagggatctacctcgtagaacactggcacaac 6501228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 156 - 237
Target Start/End: Complemental strand, 54064723 - 54064642
Alignment:
Q  156 ttgaattaagttgaacaacttggtcattctgttaacttatatctaatttactgtcacattagtccttaaattatatcgctta 237  Q
    |||||||| || || || ||||||| ||||  |||||| ||||||||||| ||||| ||||||| || ||||||||| ||||    
T  54064723 ttgaattatgtggagcagcttggtccttctaataacttgtatctaatttaatgtcaaattagtcattgaattatatcactta 54064642  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 156 - 249
Target Start/End: Complemental strand, 24133729 - 24133636
Alignment:
Q  156 ttgaattaagttgaacaacttggtcattctgttaacttatatctaatttactgtcacattagtccttaaattatatcgcttactagcaaattag 249  Q
    |||||||| || || ||| |||||| |||| ||||||| |||||||||| |||||| || ||||| | || |||||| |||| |||||||||||    
T  24133729 ttgaattacgtcgagcaaattggtccttctattaacttgtatctaattttctgtcaaatcagtccctgaagtatatcacttaatagcaaattag 24133636  T

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Target: scaffold0864 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: scaffold0864
Description:

Target: scaffold0864; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 458 - 554
Target Start/End: Complemental strand, 4613 - 4517
Alignment:
Q  458 caaaagacgttgaaaagctattccaaactttcctctcggattacgcacttcagagggatctacacggtagaacactggcacaaccacttgtcctatg 554  Q
    |||||||| |||||||| || |||||||| |||| || |||  ||||||||||| || |||| | |||| ||||| |||||||||  ||||||||||    
T  4613 caaaagactttgaaaagatactccaaactctcctgtctgatggcgcacttcagatggttctaaatggtaaaacacaggcacaaccttttgtcctatg 4517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0864; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 349 - 437
Target Start/End: Complemental strand, 4764 - 4676
Alignment:
Q  349 ttgaatgaaattacccggacttcactattggaaaccctgcgatgtttgctgcctcacgaagagcctttttccaacttagcaccaatttc 437  Q
    |||||||||||||||  ||||| | ||||  ||||||||| ||| | ||||||| ||||||| ||| | ||||| || |||||||||||    
T  4764 ttgaatgaaattaccgtgacttgagtatttcaaaccctgcaatgctagctgcctgacgaagatcctctctccaattttgcaccaatttc 4676  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 156 - 238
Target Start/End: Complemental strand, 30576048 - 30575966
Alignment:
Q  156 ttgaattaagttgaacaacttggtcattctgttaacttatatctaatttactgtcacattagtccttaaattatatcgcttac 238  Q
    ||||||||||| || ||  |||||| || || ||||||  |||||||||||| ||| |||||||| ||||||||||| |||||    
T  30576048 ttgaattaagtcgagcaggttggtccttttgataacttggatctaatttactttcaaattagtccctaaattatatcacttac 30575966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 156 - 248
Target Start/End: Original strand, 28199356 - 28199448
Alignment:
Q  156 ttgaattaagttgaacaacttggtcattctgttaacttatatctaatttactgtcacattagtccttaaattatatcgcttactagcaaatta 248  Q
    |||||||| || || |||||||||||||||| ||| || ||||| ||  ||| ||| |||||||| | ||| ||||| |||| ||||||||||    
T  28199356 ttgaattatgtcgagcaacttggtcattctgctaatttgtatctgatagactatcaaattagtccctgaataatatcacttagtagcaaatta 28199448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 156 - 218
Target Start/End: Original strand, 42335795 - 42335857
Alignment:
Q  156 ttgaattaagttgaacaacttggtcattctgttaacttatatctaatttactgtcacattagt 218  Q
    |||||||| ||||| ||||||| ||||||||||  ||| |||||||||||| |||| ||||||    
T  42335795 ttgaattatgttgagcaacttgatcattctgttggcttgtatctaatttacagtcaaattagt 42335857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 469 - 554
Target Start/End: Original strand, 22589029 - 22589114
Alignment:
Q  469 gaaaagctattccaaactttcctctcggattacgcacttcagagggatctacacggtagaacactggcacaaccacttgtcctatg 554  Q
    |||||| ||||||||||| |||| || |||  ||||||||||| || |||| | |||||||||| | |||||||  ||||||||||    
T  22589029 gaaaagatattccaaactctcctgtctgatggcgcacttcagatggttctaaatggtagaacacagacacaaccttttgtcctatg 22589114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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