View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6287_low_3 (Length: 535)
Name: NF6287_low_3
Description: NF6287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6287_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 468; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 17 - 527
Target Start/End: Complemental strand, 3789415 - 3788907
Alignment:
| Q |
17 |
aatgacttccatggaagtaaaggtaaaattgttggttgggcaccacaaagtaaaatattgaaccatccagccattgcttgcttcataagtcactgtggat |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3789415 |
aatgacttccatggaagtaaaggtaaaattgttggttgggcaccacaaagtaaaatattgaaccatccagccattgcttgcttcataagtcactgtggat |
3789316 |
T |
|
| Q |
117 |
ggaattccaccattgaaggtgtacatgccggtgtacctttcttgtgttggccatttttaactgatcaatttctcaataaatcgtatatttgtgatgtgtg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3789315 |
ggaattccaccattgaaggtgtacatgccggtgtacctttcttgtgttggccatttttaactgatcaatttctcaataaatcgtatatttgtgatgtgtg |
3789216 |
T |
|
| Q |
217 |
gaagactggacttgaattagagaaagatgatgatggatttatatcaaggcaagagataaataagaaggtggatcaagtagttggtgatgatgatataaag |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |
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| T |
3789215 |
gaagactggacttgaattagagaaagatgatgatggatttatatcaaggcaagagataaagaagaaggtggatcaagtagttggtgatgatgacataaag |
3789116 |
T |
|
| Q |
317 |
gcaatgtgtttgaaaatgaagaaaatgactattaagaatatagaagaaggtggccagtcatcacataatctccaaaagtttattacttgggcgaattatt |
416 |
Q |
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| T |
3789115 |
gaaatgtgtttgaaaatgaagaaaatgactattactaatatagaagaaggtggccagtcatcacataatcttcaaaagtttattagttgggcgaattatt |
3789016 |
T |
|
| Q |
417 |
aatgtttttataatctattatttcttgttgttttgaattagtggtgttaaatattcatgtatgatgaaggaaaaacaattagtggtgtctctttttgcct |
516 |
Q |
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| T |
3789015 |
aatgtttttataatctattatttcttgttgttttgaattagtggtgttaaatattcatgtatgatgaaggaaaaacaattagtggtgtctctttt--cct |
3788918 |
T |
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| Q |
517 |
taagtattatc |
527 |
Q |
| |
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| ||||||||| |
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| T |
3788917 |
tgagtattatc |
3788907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 17 - 464
Target Start/End: Original strand, 3800692 - 3801136
Alignment:
| Q |
17 |
aatgacttccatggaagtaaaggtaaaattgttggttgggcaccacaaagtaaaatattgaaccatccagccattgcttgcttcataagtcactgtggat |
116 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||| |
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| T |
3800692 |
aatgacttccatggaagtaaaggtaaaattgttggttgggcaccacaaagtaaaatattgaatcatccagccattgcttgctttataagtcattgtggat |
3800791 |
T |
|
| Q |
117 |
ggaattccaccattgaaggtgtacatgccggtgtacctttcttgtgttggccatttttaactgatcaatttctcaataaatcgtatatttgtgatgtgtg |
216 |
Q |
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||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |
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| T |
3800792 |
ggaattctaccatagaaggtgtacatgctggtgtacctttcttgtgttggccattttcagttgatcaatttctcaataaatcgtatatttgtgatgtgtg |
3800891 |
T |
|
| Q |
217 |
gaagactggacttgaattagagaaagatgatgatggatttatatcaaggcaagagataaataagaaggtggatcaagtagttggtgatgatgatataaag |
316 |
Q |
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|||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||| ||||||||| |||||||||||||||||||||| |||||| |
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| T |
3800892 |
gaagactggacttgaattagagaaagatgatgatggttatatatcaaggaaagagataaagaagaaggtgtatcaagtagttggtgatgatgacataaag |
3800991 |
T |
|
| Q |
317 |
gcaatgtgtttgaaaatgaagaaaatgactattaagaatatagaagaaggtggccagtcatcacataatctccaaaagtttattacttgggcgaattatt |
416 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3800992 |
gcaatgtgtttgaaaatgaagaaaatgactattactaatatagaagaaggtggccagtcatcacataatctccaaaagtttattacttgggcgaattatt |
3801091 |
T |
|
| Q |
417 |
aatgtttttataatctattatttcttgttgttttgaattagtggtgtt |
464 |
Q |
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||||| |||||||||||||| |||||||||||||||||||| |||| |
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| T |
3801092 |
aatgtgtttataatctatta---cttgttgttttgaattagtgttgtt |
3801136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 28 - 252
Target Start/End: Complemental strand, 3780346 - 3780122
Alignment:
| Q |
28 |
tggaagtaaaggtaaaattgttggttgggcaccacaaagtaaaatattgaaccatccagccattgcttgcttcataagtcactgtggatggaattccacc |
127 |
Q |
| |
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||||| |||||| || |||||||| ||||| || |||| || ||||||||||| || || |||||||| ||||| ||||| || ||||||||||| ||| |
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| T |
3780346 |
tggaactaaaggaaagattgttggatgggcgccgcaaaagaagatattgaaccaccctgctattgcttgtttcattagtcattgcggatggaattctacc |
3780247 |
T |
|
| Q |
128 |
attgaaggtgtacatgccggtgtacctttcttgtgttggccatttttaactgatcaatttctcaataaatcgtatatttgtgatgtgtggaagactggac |
227 |
Q |
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| T |
3780246 |
gtagaaggtgtatatagcggtgtacctttcttgtgttggccgtttcacggtgatcaatttatgaacaagtcatatgtttgtgatgtgtggaaggttggac |
3780147 |
T |
|
| Q |
228 |
ttgaattagagaaagatgatgatgg |
252 |
Q |
| |
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||||| |||| || ||||| ||||| |
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| T |
3780146 |
ttgaactagacaaggatgaagatgg |
3780122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 71 - 246
Target Start/End: Complemental strand, 3768025 - 3767850
Alignment:
| Q |
71 |
atattgaaccatccagccattgcttgcttcataagtcactgtggatggaattccaccattgaaggtgtacatgccggtgtacctttcttgtgttggccat |
170 |
Q |
| |
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|||||||||||||| || || ||||| ||||| ||||| ||||| |||||||| || || ||||||||| || | ||| |||||||||| |||||||||| |
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| T |
3768025 |
atattgaaccatcctgctatagcttgtttcattagtcattgtggttggaattctactatagaaggtgtatattctggtatacctttcttatgttggccat |
3767926 |
T |
|
| Q |
171 |
ttttaactgatcaatttctcaataaatcgtatatttgtgatgtgtggaagactggacttgaattagagaaagatga |
246 |
Q |
| |
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|| ||||||||||||| || || || ||||||||||||||||||||| |||| |||||||||| || ||||| |
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| T |
3767925 |
ttgcaactgatcaatttacgaacaagtcatatatttgtgatgtgtggaaggttggatttgaattagacaaggatga |
3767850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 149 - 289
Target Start/End: Complemental strand, 3755299 - 3755159
Alignment:
| Q |
149 |
gtacctttcttgtgttggccatttttaactgatcaatttctcaataaatcgtatatttgtgatgtgtggaagactggacttgaattagagaaagatgatg |
248 |
Q |
| |
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|||||||| ||||||| ||||||||| | ||||||| || | || || | |||||||||||||| |||||| |||| | | ||| || || ||||| |
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| T |
3755299 |
gtacctttgttgtgtttgccattttttagtgatcaacttatgaacaagacatatatttgtgatgtttggaaggttggattgggatttgaaaaggatgaaa |
3755200 |
T |
|
| Q |
249 |
atggatttatatcaaggcaagagataaataagaaggtggat |
289 |
Q |
| |
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||||||| ||| ||| | ||||||||| |||||||||||| |
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|
| T |
3755199 |
atggattaataacaaagggagagataaagaagaaggtggat |
3755159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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