View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6287_low_5 (Length: 462)
Name: NF6287_low_5
Description: NF6287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6287_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 406; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 9 - 445
Target Start/End: Complemental strand, 25446597 - 25446160
Alignment:
| Q |
9 |
gattattctattatatatgaattacatatgacaacattcacaacaaagcagaaactagatgttttaaaaggaatatacataatcacttatcataagataa |
108 |
Q |
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| T |
25446597 |
gattattctattatatatgaattacatatgacaacattcacaacaaagcagaaactagatgttttaaaaggaatatacataatcacttatcataagataa |
25446498 |
T |
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| Q |
109 |
gtgggtatgctataagtgtttaatttagttatttatccgaataggtttttacctcataaacttgtagtttgatgctt-tgattcatcaaattggggttgg |
207 |
Q |
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| T |
25446497 |
gtggttatactataattgtttaatttagttatttatccaaataggtttttacctcataaacttgtagtttgatacttatgattcatcaaattggggttgg |
25446398 |
T |
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| Q |
208 |
ttgaacatgcataactgaacaaagttgacaggaaaattaaatctttgttggtttttctacttgaggcttgttgtatgctctaaccttaaagaggatctac |
307 |
Q |
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| T |
25446397 |
ttgaacatgcataactgaacaaagttgacaggaaaattaaatctttggtggtttttctacttgaggcttgttgtatgctctaaccttaaagaggatctac |
25446298 |
T |
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| Q |
308 |
ctctcctaaattttctgatgagttggatataaatgagttatatatcattgtaatttgtaaataagattgaagagcataatgtaataatacgctctattct |
407 |
Q |
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| T |
25446297 |
ctctcctaaattttctgatgagttggatataaatgagttatatatcattgtaatttgtaaataagattgaagagcataatgtaataatacgctctattct |
25446198 |
T |
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| Q |
408 |
tctttctcccttatgtatcttgattcttctatcatctt |
445 |
Q |
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| T |
25446197 |
tctttctcccttatgtatcttgattcttctatcatctt |
25446160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 36 - 149
Target Start/End: Complemental strand, 24775275 - 24775158
Alignment:
| Q |
36 |
atgacaacattcacaacaaagcagaaactagatgttttaaaaggaata----tacataatcacttatcataagataagtgggtatgctataagtgtttaa |
131 |
Q |
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| T |
24775275 |
atgacaacattcacaacaaagtagaaactagatattttaaaaggaataattatccataatcacttatcatatgataagtggttatgctataagtgtttaa |
24775176 |
T |
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| Q |
132 |
tttagttatttatccgaa |
149 |
Q |
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| T |
24775175 |
tttagttatttatccgaa |
24775158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 268 - 316
Target Start/End: Complemental strand, 24774889 - 24774841
Alignment:
| Q |
268 |
ttgaggcttgttgtatgctctaaccttaaagaggatctacctctcctaa |
316 |
Q |
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| T |
24774889 |
ttgaggcttgttgtatgctctgaccttaaaaaggatctacctctcctaa |
24774841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 402 - 445
Target Start/End: Complemental strand, 24774818 - 24774775
Alignment:
| Q |
402 |
tattcttctttctcccttatgtatcttgattcttctatcatctt |
445 |
Q |
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| T |
24774818 |
tattcttctttctcccttatgtatcttgattcttctattatctt |
24774775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 141 - 181
Target Start/End: Complemental strand, 24774974 - 24774934
Alignment:
| Q |
141 |
ttatccgaataggtttttacctcataaacttgtagtttgat |
181 |
Q |
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| T |
24774974 |
ttatccgaattggtttttacctcataaacttgtagtttgat |
24774934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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