View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6287_low_6 (Length: 443)
Name: NF6287_low_6
Description: NF6287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6287_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 7 - 434
Target Start/End: Complemental strand, 51268536 - 51268126
Alignment:
| Q |
7 |
gagagctcggtcacttacctgccagaatattccctaaccgcctcgccgcctccgaggtcaccatttctctacctattttctctagattttagtttgtttt |
106 |
Q |
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| T |
51268536 |
gagagctcggtcacttacctgccagaatattccctaaccgcctcgccgcctccgaggtcaccatttctcta-------------gattttagtttgtttt |
51268450 |
T |
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| Q |
107 |
ttaattagggtttcaaaacatatacatatgaatgaatgtgtttcctgtaatctgattaattgatgttattacgtgatttaggatcttgttcttcgacttg |
206 |
Q |
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| T |
51268449 |
ttaattagggtttcaaaacatatacatatgaatt----tgtttcctgtaatctgattaattgatgttattacgtgatttaggatcttgttcttcgacttg |
51268354 |
T |
|
| Q |
207 |
atgtatttaaaaagctcgacaagcacagaggctgtgtcaacactgtatgcttcaatgcagatggtgacattctgctttcaggttctgatgacaggaggat |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51268353 |
atgtatttaaaaagctcgacaagcacagaggctgtgtcaacactgtatgcttcaatgcagatggtgacattctgctttcaggttctgatgacaggaggat |
51268254 |
T |
|
| Q |
307 |
tattctctgggattgggaaaccggccgtgttaagctctccttccattccggtcatagtaacaatgttttccaggcgaagttcatgcctcactcctatgat |
406 |
Q |
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| T |
51268253 |
tattctctgggattgggaaaccggccgtgttaagctctccttccattccggtcatagtaacaatgttttccaggcgaagttcatgtctcactcctatgat |
51268154 |
T |
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| Q |
407 |
cgtagcattgtcacttgtgctgatgatg |
434 |
Q |
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| T |
51268153 |
cgtagcattgtcacttgtgctgctgatg |
51268126 |
T |
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Target: chr2 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 138 - 312
Target Start/End: Complemental strand, 6847354 - 6847179
Alignment:
| Q |
138 |
atgaatgtgtttcctgtaatctgattaattgatgttattacgtgatttaggatcttgttcttcgacttgatgtatttaaaaagctcgacaagcacagagg |
237 |
Q |
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|||||||||||| ||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||| ||||||| ||| |
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| T |
6847354 |
atgaatgtgttttctgaaatctgattaattgatgttattacgtgatttaggatctagtccttcgacttgatgtattcaaaaagctcgaaaagcacaaagg |
6847255 |
T |
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| Q |
238 |
ctgtgtc-aacactgtatgcttcaatgcagatggtgacattctgctttcaggttctgatgacaggaggattattct |
312 |
Q |
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|||||| |||| |||| |||||||| ||||||||||||||| |||||| |||||||||| | |||||||||||| |
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| T |
6847254 |
ttgtgtctaacaaggtattcttcaatgtagatggtgacattctactttcaagttctgatgatatgaggattattct |
6847179 |
T |
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