View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6287_low_8 (Length: 386)
Name: NF6287_low_8
Description: NF6287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6287_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 350; Significance: 0; HSPs: 11)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 369
Target Start/End: Original strand, 10793820 - 10794189
Alignment:
| Q |
1 |
tgctgttagactatcccttcttcccaatggaacgatccaaccgggacctttactctgtgaatatagatttatgttattttaagaccatatatttt-ttaa |
99 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
10793820 |
tgctgttagactatcccttcttcccaatggaacgatccaaccgggacctttactctgtgaatatagatttatgttattttaagaccatatatttttttaa |
10793919 |
T |
|
| Q |
100 |
aaggtaaacacaaatattatgattttatgtaaaactaatttcttgaaactaaaaataattagctagacatatatgtaccaggacggaagatattctagca |
199 |
Q |
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| T |
10793920 |
aaggtaaacacaaatattatgattttatgtaaaactaatttcttgaaactaaaaataattagcttgacatatatgtaccaggacggaagatattctagca |
10794019 |
T |
|
| Q |
200 |
gcaagtgcaagaatatcagcacaagaaactgtattagggcaagctttttccacggctgtcttgatacgattcacaacttgcaaacctcttatggagttga |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10794020 |
gcaagtgcaagaatatcagcacaagaaactgtattagggcaagctttttccacgtctgtcttgatacgattcacaacttgcaaacctcttatggagttga |
10794119 |
T |
|
| Q |
300 |
tatttgggagagcttgtagttcgctcacgatagtagcggtgttgttcagcaaaatggatgcatcgcaacc |
369 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
10794120 |
tatttgggagagcttgtagttcgctcacgatagtagcagtgttgttcagcaaaatggatgcatcgcaacc |
10794189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 170 - 369
Target Start/End: Complemental strand, 11110297 - 11110098
Alignment:
| Q |
170 |
atatgtaccaggacggaagatattctagcagcaagtgcaagaatatcagcacaagaaactgtattagggcaagctttttccacggctgtcttgatacgat |
269 |
Q |
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| T |
11110297 |
atatgtaccagaacagaagatattccagacgcaagtgtaagaatatcagcacaagaaactctattagggcaagctttttccactttagtcttgatttgat |
11110198 |
T |
|
| Q |
270 |
tcacaacttgcaaacctcttatggagttgatatttgggagagcttgtagttcgctcacgatagtagcggtgttgttcagcaaaatggatgcatcgcaacc |
369 |
Q |
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| | ||| | ||| ||||||| ||||||||||||||| | ||| | | |||| ||||| ||||| |||||||| |||| ||||| |||||||| ||||| |
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| T |
11110197 |
tgataacatccaatcctcttaaggagttgatatttggaaaagcatcttgttcactcacaatagttgcggtgttattcaacaaaactgatgcatcacaacc |
11110098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 197 - 369
Target Start/End: Complemental strand, 11137122 - 11136950
Alignment:
| Q |
197 |
gcagcaagtgcaagaatatcagcacaagaaactgtattagggcaagctttttccacggctgtcttgatacgattcacaacttgcaaacctcttatggagt |
296 |
Q |
| |
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|||| ||| |||||||||||||||||||||||||| ||||| ||||| |||||||| ||||| ||||| |||||||||| | |||||||| || |||| |
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| T |
11137122 |
gcagaaagggcaagaatatcagcacaagaaactgtgttaggacaagccttttccactgctgttttgatttgattcacaacatccaaacctcgtagagagt |
11137023 |
T |
|
| Q |
297 |
tgatatttgggagagcttgtagttcgctcacgatagtagcggtgttgttcagcaaaatggatgcatcgcaacc |
369 |
Q |
| |
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|||||||||||| ||||| | |||| ||||| || ||| | || ||||||| |||| |||||||| ||||| |
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| T |
11137022 |
tgatatttgggaaagcttcttgttcactcacaatggtatcagttttgttcaataaaactgatgcatcacaacc |
11136950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 196 - 369
Target Start/End: Complemental strand, 11145422 - 11145249
Alignment:
| Q |
196 |
agcagcaagtgcaagaatatcagcacaagaaactgtattagggcaagctttttccacggctgtcttgatacgattcacaacttgcaaacctcttatggag |
295 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| ||||||||||| ||||| || ||||| ||||| |||||||||| | ||||||||| | ||| |
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| T |
11145422 |
agcagcaagagcaagaatatcagcacaagaaactgtgttagggcaagccttttctactgctgttttgatttgattcacaacatccaaacctctcaatgag |
11145323 |
T |
|
| Q |
296 |
ttgatatttgggagagcttgtagttcgctcacgatagtagcggtgttgttcagcaaaatggatgcatcgcaacc |
369 |
Q |
| |
|
|| | ||||| | ||| | | |||| || || |||||||| ||||| |||| ||||| |||||||| ||||| |
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| T |
11145322 |
tttctgtttggaaaagcatcttgttcactgacaatagtagcagtgttattcaacaaaactgatgcatcacaacc |
11145249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 196 - 353
Target Start/End: Complemental strand, 11155739 - 11155582
Alignment:
| Q |
196 |
agcagcaagtgcaagaatatcagcacaagaaactgtattagggcaagctttttccacggctgtcttgatacgattcacaacttgcaaacctcttatggag |
295 |
Q |
| |
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||||||||| |||||||||||||||||||||||||| ||||| ||||| |||| | || || ||||| |||| ||||| | ||||||||||| ||| |
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| T |
11155739 |
agcagcaagagcaagaatatcagcacaagaaactgtgttaggacaagcactttctatagcagttttgatctgatttacaacatccaaacctcttaaagag |
11155640 |
T |
|
| Q |
296 |
ttgatatttgggagagcttgtagttcgctcacgatagtagcggtgttgttcagcaaaa |
353 |
Q |
| |
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||| ||||||| | ||||||| ||||||| ||||| ||||| || ||||||| ||||| |
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| T |
11155639 |
ttgttatttggaaaagcttgttgttcgcttacgatcgtagcagtattgttcaacaaaa |
11155582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 196 - 304
Target Start/End: Complemental strand, 11171347 - 11171239
Alignment:
| Q |
196 |
agcagcaagtgcaagaatatcagcacaagaaactgtattagggcaagctttttccacggctgtcttgatacgattcacaacttgcaaacctcttatggag |
295 |
Q |
| |
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||||||||| ||||||||||||||||||||||| || ||||| ||||| |||||||| ||||| ||||| |||||||||| | ||||||||||| ||| |
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| T |
11171347 |
agcagcaagagcaagaatatcagcacaagaaacagtgttaggacaagcattttccactgctgttttgatttgattcacaacatctaaacctcttattgag |
11171248 |
T |
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| Q |
296 |
ttgatattt |
304 |
Q |
| |
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||| ||||| |
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| T |
11171247 |
ttgttattt |
11171239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 185 - 369
Target Start/End: Complemental strand, 11177364 - 11177180
Alignment:
| Q |
185 |
gaagatattctagcagcaagtgcaagaatatcagcacaagaaactgtattagggcaagctttttccacggctgtcttgatacgattcacaacttgcaaac |
284 |
Q |
| |
|
||||||||| ||||| ||| ||||||||||||||||||||||| || ||||| ||||| |||||||| ||||| ||||| | || | || | ||||| |
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| T |
11177364 |
gaagatatttcagcagaaagggcaagaatatcagcacaagaaacagtgttaggacaagcattttccaccgctgttttgatctggtttatcacgtccaaac |
11177265 |
T |
|
| Q |
285 |
ctcttatggagttgatatttgggagagcttgtagttcgctcacgatagtagcggtgttgttcagcaaaatggatgcatcgcaacc |
369 |
Q |
| |
|
|||||||||||||| ||||||| | || | | |||||||| || ||||| || | |||||||||||| |||||||||||||| |
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|
| T |
11177264 |
ctcttatggagttgttatttggtggtgcactttgctcgctcactatcgtagccgtatcgttcagcaaaatcgatgcatcgcaacc |
11177180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 270 - 363
Target Start/End: Complemental strand, 11200217 - 11200124
Alignment:
| Q |
270 |
tcacaacttgcaaacctcttatggagttgatatttgggagagcttgtagttcgctcacgatagtagcggtgttgttcagcaaaatggatgcatc |
363 |
Q |
| |
|
||||||| | ||||||||||||||||||||||||||| | ||||||| ||||||| ||||| || || |||||||||||||||| |||||||| |
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|
| T |
11200217 |
tcacaacatccaaacctcttatggagttgatatttggaaaagcttgttgttcgcttacgattgttgctgtgttgttcagcaaaaccgatgcatc |
11200124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 11118455 - 11118393
Alignment:
| Q |
1 |
tgctgttagactatcccttcttcccaatggaacgatccaaccgggacctttactctgtgaata |
63 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |
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|
| T |
11118455 |
tgctgttagactatcccttcttcccaatggaacgatccaacctggacccccactctgtgaata |
11118393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 196 - 290
Target Start/End: Complemental strand, 11149356 - 11149262
Alignment:
| Q |
196 |
agcagcaagtgcaagaatatcagcacaagaaactgtattagggcaagctttttccacggctgtcttgatacgattcacaacttgcaaacctctta |
290 |
Q |
| |
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||||| ||| |||||||||||||| ||||||||||| ||||| ||||| |||||||| ||||| ||||| |||||||||| | |||||||||| |
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| T |
11149356 |
agcagaaagggcaagaatatcagcgcaagaaactgtgttaggacaagccttttccacagctgttttgatttgattcacaacatctaaacctctta |
11149262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 170 - 252
Target Start/End: Complemental strand, 11118301 - 11118219
Alignment:
| Q |
170 |
atatgtaccaggacggaagatattctagcagcaagtgcaagaatatcagcacaagaaactgtattagggcaagctttttccac |
252 |
Q |
| |
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|||| |||||| || ||||||| || ||| ||||||| ||||||||||||||||||||| ||||||| ||| |||||||||| |
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|
| T |
11118301 |
atatttaccagaactgaagatactccagctgcaagtgtgagaatatcagcacaagaaactttattaggacaaactttttccac |
11118219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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