View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6287_low_9 (Length: 342)
Name: NF6287_low_9
Description: NF6287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6287_low_9 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 15 - 319
Target Start/End: Original strand, 40770710 - 40771014
Alignment:
| Q |
15 |
acatcatcaatcattaagcatacaacattttccattcacaatggaatcctgttcttcatcaatatgtgaactaccaacaaatctaagatcagtcaataac |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
40770710 |
acatcatcaatcattaagcatacaacattttccattcacaatggaatcctgttcttcatcaatatgtgaactaccaacaaatcaaagatcagtcaataac |
40770809 |
T |
|
| Q |
115 |
agcatagctccatttatgacttctgaatcaaatagaccatatttcatagcagtatgcacagaggtattactacttccacttataacaatatttgcacaat |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
40770810 |
agcatagctccatttatgacttctgaatcaaatagaccatatttcatagcagtatgcacagaggtattactacttcgacttataacaatatttgcacaat |
40770909 |
T |
|
| Q |
215 |
tttttcatgtcattagactaacattgttttaattatatcacagattatttgtgaactagatcccctaattattgctgacctttatgatgaacttcaacat |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
40770910 |
tttttcatgtcattagactaacattgttttaattatatcacagattatttgtgaactagatcccctaattattgctgacctttatgatgaacttcaagat |
40771009 |
T |
|
| Q |
315 |
gaatt |
319 |
Q |
| |
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||||| |
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|
| T |
40771010 |
gaatt |
40771014 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 15 - 319
Target Start/End: Complemental strand, 8332369 - 8332065
Alignment:
| Q |
15 |
acatcatcaatcattaagcatacaacattttccattcacaatggaatcctgttcttcatcaatatgtgaactaccaacaaatctaagatcagtcaataac |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
8332369 |
acatcatcaatcattaagcatacaacattttccattcacaatggaatcctgttcttcatcaatatgtgaactaccaacaaatcaaagatcagtcaataac |
8332270 |
T |
|
| Q |
115 |
agcatagctccatttatgacttctgaatcaaatagaccatatttcatagcagtatgcacagaggtattactacttccacttataacaatatttgcacaat |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
8332269 |
agcatagctccatttatgacttctgaatcaaatagaccatatttcatagcagtatgcacagaggtattactacttcgacttataacaatatttgcacaat |
8332170 |
T |
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| Q |
215 |
tttttcatgtcattagactaacattgttttaattatatcacagattatttgtgaactagatcccctaattattgctgacctttatgatgaacttcaacat |
314 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
8332169 |
tttttaatgtcattagactaacattgttttaattatatcacagattatttgtgaactagatcccctaattattgctgacctttatgatgaacttcaagat |
8332070 |
T |
|
| Q |
315 |
gaatt |
319 |
Q |
| |
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||||| |
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|
| T |
8332069 |
gaatt |
8332065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 53 - 182
Target Start/End: Original strand, 17020528 - 17020657
Alignment:
| Q |
53 |
caatggaatcctgttcttcatcaatatgtgaactaccaacaaatctaagatcagtcaataacagcatagctccatttatgacttctgaatcaaatagacc |
152 |
Q |
| |
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|||||||||| | ||||||||||| ||||||||||| ||||| ||||||||| ||| ||||||||||||||| |||||||||||| | ||| |||| |
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| T |
17020528 |
caatggaatcaagctcttcatcaattagtgaactaccacaaaatcaaagatcagttaattgcagcatagctccattaatgacttctgaaactaatcgacc |
17020627 |
T |
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| Q |
153 |
atatttcatagcagtatgcacagaggtatt |
182 |
Q |
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| ||||| ||||| |||||||||||||| |
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| T |
17020628 |
tttcttcattgcagtttgcacagaggtatt |
17020657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 53 - 188
Target Start/End: Complemental strand, 119473 - 119338
Alignment:
| Q |
53 |
caatggaatcctgttcttcatcaatatgtgaactaccaacaaatctaagatcagtcaataacagcatagctccatttatgacttctgaatcaaatagacc |
152 |
Q |
| |
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|||||||||| |||||||||||| ||||||||||| ||||| ||||||||| ||| ||||||||||||||| |||||||||||| | ||| |||| |
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| T |
119473 |
caatggaatcaatttcttcatcaatcagtgaactaccacaaaatcaaagatcagttaattgcagcatagctccattaatgacttctgaaactaatcgacc |
119374 |
T |
|
| Q |
153 |
atatttcatagcagtatgcacagaggtattactact |
188 |
Q |
| |
|
| ||| | ||||| |||||||||||||||||||| |
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|
| T |
119373 |
tttcttcgttgcagtttgcacagaggtattactact |
119338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 55 - 311
Target Start/End: Original strand, 19777177 - 19777432
Alignment:
| Q |
55 |
atggaatcctgttcttcatcaatatgtgaactaccaacaaatctaagatcagtcaataacagcatagctccatttatgacttctgaatcaaatagaccat |
154 |
Q |
| |
|
||||| ||| |||||||||| ||| ||||| ||| ||| |||| | |||||| ||| ||||||||||||||| ||||| ||||| || |||||||||| |
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| T |
19777177 |
atggagtccagttcttcatccataagtgaaatacaaaccaatcaaccatcagtaaattgcagcatagctccattgatgacatctgagtctaatagaccat |
19777276 |
T |
|
| Q |
155 |
atttcatagcagtatgcacagaggtattactacttccacttataacaatatttgcacaattttttcatgtcattagactaacattgttttaattatatca |
254 |
Q |
| |
|
|||||| ||| | ||||||||||||||||| ||| | || | | ||| || |||||| | |||||| |||||||| |||| ||||| || |
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|
| T |
19777277 |
ttttcattgcaatctgcacagaggtattactccttttaactacatatttttttatac-tttttttgttatcattatgctaacattattttctttataaca |
19777375 |
T |
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| Q |
255 |
cagattatttgtgaactagatcccctaattattgctgacctttatgatgaacttcaa |
311 |
Q |
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||||| ||||| ||| ||||||| || ||||||||||| |||||||||||||||||| |
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| T |
19777376 |
cagataatttgcgaattagatccgcttattattgctgaactttatgatgaacttcaa |
19777432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 52 - 181
Target Start/End: Complemental strand, 144125 - 143996
Alignment:
| Q |
52 |
acaatggaatcctgttcttcatcaatatgtgaactaccaacaaatctaagatcagtcaataacagcatagctccatttatgacttctgaatcaaatagac |
151 |
Q |
| |
|
||||||||||| ||||||||| ||| ||||||||||| ||||| ||||||||| ||| ||||||||||||| | |||||||||||| ||||||| |
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|
| T |
144125 |
acaatggaatcaagttcttcattaattagtgaactaccacaaaatcaaagatcagttaattgcagcatagctccaatgatgacttctgaaagtaatagac |
144026 |
T |
|
| Q |
152 |
catatttcatagcagtatgcacagaggtat |
181 |
Q |
| |
|
| | ||||| ||||| ||||||||||||| |
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|
| T |
144025 |
ctttcttcattgcagtttgcacagaggtat |
143996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 52 - 181
Target Start/End: Complemental strand, 18059832 - 18059703
Alignment:
| Q |
52 |
acaatggaatcctgttcttcatcaatatgtgaactaccaacaaatctaagatcagtcaataacagcatagctccatttatgacttctgaatcaaatagac |
151 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||||||| ||||| ||||||||| ||| |||||||||||| | |||||||||||| ||||||| |
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| T |
18059832 |
acaatggaatcaagttcttcatcaattagtgaactaccacaaaatcaaagatcagttaattgtagcatagctccaatgatgacttctgaaagtaatagac |
18059733 |
T |
|
| Q |
152 |
catatttcatagcagtatgcacagaggtat |
181 |
Q |
| |
|
| | ||||| ||||| ||||||||||||| |
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|
| T |
18059732 |
ctttcttcattgcagtttgcacagaggtat |
18059703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 114 - 186
Target Start/End: Complemental strand, 4255255 - 4255183
Alignment:
| Q |
114 |
cagcatagctccatttatgacttctgaatcaaatagaccatatttcatagcagtatgcacagaggtattacta |
186 |
Q |
| |
|
||||| ||||||||| ||||| |||||| |||||||| | |||| |||| || |||||||||||||||||| |
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|
| T |
4255255 |
cagcagagctccattgatgacaattgaatccaatagaccttctttcttagctgtttgcacagaggtattacta |
4255183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 114 - 186
Target Start/End: Complemental strand, 21898225 - 21898153
Alignment:
| Q |
114 |
cagcatagctccatttatgacttctgaatcaaatagaccatatttcatagcagtatgcacagaggtattacta |
186 |
Q |
| |
|
||||| ||||||||| ||||| |||||| |||||||| | |||| |||| || |||||||||||||||||| |
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| T |
21898225 |
cagcagagctccattgatgacaattgaatccaatagaccttctttcttagctgtttgcacagaggtattacta |
21898153 |
T |
|
Back To:
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