View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6288_high_3 (Length: 354)
Name: NF6288_high_3
Description: NF6288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6288_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 347
Target Start/End: Original strand, 2241148 - 2241495
Alignment:
| Q |
1 |
ccatataagagcttgaaagagagtttgagaatgaatgaaagtactagtgcacccttcttcagtcataaactatgcaagaacaaagctcacataaaagaag |
100 |
Q |
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| T |
2241148 |
ccatataagagcttgaaagagagtttgagaatgaatgaaagtactagtgcacccttcttcagtcataaactatgcaagaacaaagctcacataaaagaag |
2241247 |
T |
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| Q |
101 |
aaaatgatggtagctagtggggggtgcatataataatagtgcaaacttttttgattgttgaagcaatacaagtttctgaaataaaagagtggagtgagat |
200 |
Q |
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| T |
2241248 |
aaaatgatggtagctagtggggggtgcatataataatagtgcaaacttttttgattgttgaagcaatacaagtttctgaaataaaagagtggagtgagat |
2241347 |
T |
|
| Q |
201 |
cttgaccttg-nnnnnnnnctttgtgagttgtagtaatgatggtgcctttaggattgtggggtggttgagacctaaagggaagaggatgatgtgggcata |
299 |
Q |
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|||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2241348 |
cttgaccttgtttttttttctctgtgagttgtagtaatgatggtgcctttaggattgtggggtggttgagacctaaagggaagaggatgatgtgggcata |
2241447 |
T |
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| Q |
300 |
atgatggtgattgagaacaaaacaacagagagacatgatgatgatgat |
347 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2241448 |
atgatggtgattgagaacaaaacaacagagagacatgatgatgatgat |
2241495 |
T |
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