View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6288_high_4 (Length: 311)

Name: NF6288_high_4
Description: NF6288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6288_high_4
NF6288_high_4
[»] chr5 (16 HSPs)
chr5 (8-311)||(41366166-41366469)
chr5 (25-295)||(41332003-41332273)
chr5 (25-295)||(41327990-41328260)
chr5 (29-225)||(41316027-41316223)
chr5 (14-295)||(41324081-41324362)
chr5 (30-134)||(31188759-31188863)
chr5 (30-132)||(31224950-31225052)
chr5 (14-296)||(41336921-41337203)
chr5 (30-295)||(31178553-31178818)
chr5 (29-295)||(41322077-41322344)
chr5 (14-134)||(41369565-41369685)
chr5 (25-137)||(41430954-41431066)
chr5 (30-96)||(31185277-31185343)
chr5 (107-291)||(41286141-41286325)
chr5 (25-83)||(41359838-41359895)
chr5 (215-296)||(41369703-41369784)
[»] chr4 (1 HSPs)
chr4 (32-288)||(17249293-17249549)


Alignment Details
Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 8 - 311
Target Start/End: Original strand, 41366166 - 41366469
Alignment:
Q  8 cgaagaatatgtgtcgaagagctattaagtgcaaaacgtgtcgaatcatttaggtccattagagaagaagaggtgtcaaatcttgttaaatcaataactg 107  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41366166 cgaaaaatatgtgttgaagagctattaagtgcaaaacgtgtcgaatcatttaggtccattagagaagaagaggtgtcaaatcttgttaaatcaataactg 41366265  T
Q  108 caagtgaaggatcagttgttaatctcactcaaatgattctctcattaacaattgggatgacagcgcggacagcatttggaaaaaagaataaacaccaaga 207  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  41366266 caagtgaaggatcggttgttaatctcactcaaatgattctctcattaacaattgggatgacagcgcgggcagcatttggaaaaaagaataaacaccaaga 41366365  T
Q  208 agtgtttaaatcagcaatgaaggaaatatttaagctattgggaggattttcttttgcagatttgtatccttctattaaaattcttcaaatgttaagttgg 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41366366 agtgtttaaatcagcaatgaaggaaatatttaagctattgggaggattttcttttgcagatttgtatccttctattaaaattcttcaaatgttaagttgg 41366465  T
Q  308 ccaa 311  Q
    ||||    
T  41366466 ccaa 41366469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 25 - 295
Target Start/End: Original strand, 41332003 - 41332273
Alignment:
Q  25 agagctattaagtgcaaaacgtgtcgaatcatttaggtccattagagaagaagaggtgtcaaatcttgttaaatcaataactgcaagtgaaggatcagtt 124  Q
    |||||||||||||||||| |||||| |||||||||||||||| |||||||| || ||| ||||||||||||||||||||||||||||||||||||| |||    
T  41332003 agagctattaagtgcaaagcgtgtccaatcatttaggtccataagagaagatgaagtgacaaatcttgttaaatcaataactgcaagtgaaggatcggtt 41332102  T
Q  125 gttaatctcactcaaatgattctctcattaacaattgggatgacagcgcggacagcatttggaaaaaagaataaacaccaagaagtgtttaaatcagcaa 224  Q
    || ||||||||||  | |||| ||||| | |||| |||||| ||||||||| |||| ||||| |||| ||||| | ||||||| ||||| | ||||||||    
T  41332103 gtaaatctcactcggaagattttctcaatgacaaatgggataacagcgcgggcagcttttgggaaaaggaatagaaaccaagatgtgttcatatcagcaa 41332202  T
Q  225 tgaaggaaatatttaagctattgggaggattttcttttgcagatttgtatccttctattaaaattcttcaa 295  Q
    || || || ||||   |||||| |||||||||    |||||||||||||||||||||||||||| ||||||    
T  41332203 tggagaaagtattggtgctattaggaggatttgaaattgcagatttgtatccttctattaaaatgcttcaa 41332273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 25 - 295
Target Start/End: Original strand, 41327990 - 41328260
Alignment:
Q  25 agagctattaagtgcaaaacgtgtcgaatcatttaggtccattagagaagaagaggtgtcaaatcttgttaaatcaataactgcaagtgaaggatcagtt 124  Q
    |||||||||||||||||| |||||  |||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  41327990 agagctattaagtgcaaagcgtgtacaatcatttaggtccataagagaagatgaggtgtcaaaccttgttaaatcaataactgcaagtgaaggatcagtt 41328089  T
Q  125 gttaatctcactcaaatgattctctcattaacaattgggatgacagcgcggacagcatttggaaaaaagaataaacaccaagaagtgtttaaatcagcaa 224  Q
    |||||||||||||  | |||| ||||| | |||| |||||| ||||||||| |||| ||||| |||| ||||| ||||||||| ||||| | | |||||     
T  41328090 gttaatctcactcggaagattttctcaatgacaaatgggataacagcgcgggcagcttttgggaaaaggaatagacaccaagatgtgttcataccagcat 41328189  T
Q  225 tgaaggaaatatttaagctattgggaggattttcttttgcagatttgtatccttctattaaaattcttcaa 295  Q
    || || || || |   |||||| ||| |||||    |||||||||||||||||||||||||| | ||||||    
T  41328190 tggagaaagtagtggtgctattaggaagatttgaaattgcagatttgtatccttctattaaattgcttcaa 41328260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 29 - 225
Target Start/End: Original strand, 41316027 - 41316223
Alignment:
Q  29 ctattaagtgcaaaacgtgtcgaatcatttaggtccattagagaagaagaggtgtcaaatcttgttaaatcaataactgcaagtgaaggatcagttgtta 128  Q
    |||||||| ||||| |||||| ||||||||||||| || |||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||    
T  41316027 ctattaagcgcaaagcgtgtccaatcatttaggtctataagagaagatgaagtgacaaatcttgttaaatcaataactgcaagtgaaggatcagttgtta 41316126  T
Q  129 atctcactcaaatgattctctcattaacaattgggatgacagcgcggacagcatttggaaaaaagaataaacaccaagaagtgtttaaatcagcaat 225  Q
    |||||||||| | |||| | |||   |||  |||||| ||||||||  | || ||||| |||| ||  ||||||||||||||||||| |||||||||    
T  41316127 atctcactcagaagattttgtcaacgacatatgggataacagcgcgagcggcttttgggaaaaggagcaaacaccaagaagtgtttagatcagcaat 41316223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 14 - 295
Target Start/End: Original strand, 41324081 - 41324362
Alignment:
Q  14 atatgtgtcgaagagctattaagtgcaaaacgtgtcgaatcatttaggtccattagagaagaagaggtgtcaaatcttgttaaatcaataactgcaagtg 113  Q
    |||||||| | |||||||||||||||||| |||||| |||||||||||||||  |||||||| || || |||||||||| || |||||||||||||||||    
T  41324081 atatgtgttgtagagctattaagtgcaaagcgtgtccaatcatttaggtccacaagagaagatgaagtatcaaatcttgctacatcaataactgcaagtg 41324180  T
Q  114 aaggatcagttgttaatctcactcaaatgattctctcattaacaattgggatgacagcgcggacagcatttggaaaaaagaataaacaccaagaagtgtt 213  Q
    |||||||| |||||||||||||||| | |||| ||||| | |||  |||||| ||| ||||| | || ||||| |||| ||  ||||||||  ||  |||    
T  41324181 aaggatcaattgttaatctcactcataagattttctcaatgacatatgggataacaacgcgggcggcttttggcaaaaggagcaaacaccagcaatcgtt 41324280  T
Q  214 taaatcagcaatgaaggaaatatttaagctattgggaggattttcttttgcagatttgtatccttctattaaaattcttcaa 295  Q
    |||||||||| |  |||||||| | |   | ||||||||  ||| | |||  ||||||||||||||||||||| | ||||||    
T  41324281 taaatcagcagtagaggaaatagtaagtttgttgggaggcatttgtattgttgatttgtatccttctattaaattgcttcaa 41324362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 30 - 134
Target Start/End: Complemental strand, 31188863 - 31188759
Alignment:
Q  30 tattaagtgcaaaacgtgtcgaatcatttaggtccattagagaagaagaggtgtcaaatcttgttaaatcaataactgcaagtgaaggatcagttgttaa 129  Q
    ||||||||||||| |||||| |||| |||||||  || |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||    
T  31188863 tattaagtgcaaagcgtgtccaatcgtttaggtatataagagaagaagaggtgtcaaatcttgttaaatcaatatctgcaagtgaaggatcaattgttaa 31188764  T
Q  130 tctca 134  Q
    |||||    
T  31188763 tctca 31188759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 30 - 132
Target Start/End: Original strand, 31224950 - 31225052
Alignment:
Q  30 tattaagtgcaaaacgtgtcgaatcatttaggtccattagagaagaagaggtgtcaaatcttgttaaatcaataactgcaagtgaaggatcagttgttaa 129  Q
    ||||||||||||| |||||| ||||||||||||  || ||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||    
T  31224950 tattaagtgcaaagcgtgtccaatcatttaggtatataagagaagaagaggtgtcaaatcttgttgaatcaatatctgcaagtgaaggatcaattgttaa 31225049  T
Q  130 tct 132  Q
    |||    
T  31225050 tct 31225052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 14 - 296
Target Start/End: Original strand, 41336921 - 41337203
Alignment:
Q  14 atatgtgtcgaagagctattaagtgcaaaacgtgtcgaatcatttaggtccattagagaagaagaggtgtcaaatcttgttaaatcaataactgcaagtg 113  Q
    |||||||| | ||||||||||||||||||||||||| |||| ||||| | ||| |||||||||||||||||  ||||||||||||||||| |||||| ||    
T  41336921 atatgtgttgtagagctattaagtgcaaaacgtgtccaatcttttagtttcataagagaagaagaggtgtccgatcttgttaaatcaatatctgcaaatg 41337020  T
Q  114 aaggatcagttgttaatctcactcaaatgattctctcattaacaattgggatgacagcgcggacagcatttggaaaaaagaataaacaccaagaagtgtt 213  Q
    |||||||| | ||||||||| || |   |||| ||||| | ||   ||||||    || ||  |||| ||||| |||||||| | ||||||| || ||||    
T  41337021 aaggatcaatcgttaatctctctaagtcgattttctcaatgacttatgggatcgtggcacgttcagcgtttgggaaaaagaacagacaccaacaattgtt 41337120  T
Q  214 taaatcagcaatgaaggaaatatttaagctattgggaggattttcttttgcagatttgtatccttctattaaaattcttcaaa 296  Q
     |||||| ||||  |||||  |||    |||||||||| ||||| | |||| || |||||||||||||||||||| |||||||    
T  41337121 caaatcaacaatagaggaagcattgggcctattgggagaattttgtattgctgacttgtatccttctattaaaatacttcaaa 41337203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 30 - 295
Target Start/End: Complemental strand, 31178818 - 31178553
Alignment:
Q  30 tattaagtgcaaaacgtgtcgaatcatttaggtccattagagaagaagaggtgtcaaatcttgttaaatcaataactgcaagtgaaggatcagttgttaa 129  Q
    ||||||||||||| | |||| ||||||||||||  || |||||| ||||||||||||||||| ||||||| ||| || ||||| ||||||||||||| ||    
T  31178818 tattaagtgcaaagcatgtccaatcatttaggtatataagagaataagaggtgtcaaatcttattaaatcgatatctacaagtaaaggatcagttgtaaa 31178719  T
Q  130 tctcactcaaatgattctctcattaacaattgggatgacagcgcggacagcatttggaaaaaagaataaacaccaagaagtgtttaaatcagcaatgaag 229  Q
    ||||| ||| | |||| || || | |||   | ||| ||  | ||  |||| ||||| |||| ||||||||||||| |||||||  |||||||||| |||    
T  31178718 tctcagtcataagattttcgcaatgacatcggcgataacgacacgagcagcgtttgggaaaaggaataaacaccaacaagtgttccaatcagcaataaag 31178619  T
Q  230 gaaatatttaagctattgggaggattttcttttgcagatttgtatccttctattaaaattcttcaa 295  Q
    ||||||   |   |  |||||||||||| | |||| ||| ||||||||||||||||||| ||||||    
T  31178618 gaaatagcgagtttgatgggaggattttgtattgctgatgtgtatccttctattaaaatgcttcaa 31178553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 29 - 295
Target Start/End: Original strand, 41322077 - 41322344
Alignment:
Q  29 ctattaagtgcaaaacgtgtcgaatcatttaggtccattagagaagaagaggtgtcaaatcttgttaaatcaataac-tgcaagtgaaggatcagttgtt 127  Q
    |||||||||||||| ||  || ||||||||||||| || |||||||| || ||| |||||||||||||||||||||| |  |||||||||||||||||||    
T  41322077 ctattaagtgcaaagcgcatccaatcatttaggtctataagagaagatgaagtgacaaatcttgttaaatcaataacttttaagtgaaggatcagttgtt 41322176  T
Q  128 aatctcactcaaatgattctctcattaacaattgggatgacagcgcggacagcatttggaaaaaagaataaacaccaagaagtgtttaaatcagcaatga 227  Q
    ||||||| | | | |||| ||||| | |||  |||||| |||||| || | |  ||||| |||| ||||| ||||||||| ||||| | | ||||| ||     
T  41322177 aatctcagtgagaagattttctcaatgacatatgggataacagcgagggcggtttttgggaaaaggaatagacaccaagatgtgttcataccagcattgg 41322276  T
Q  228 aggaaatatttaagctattgggaggattttcttttgcagatttgtatccttctattaaaattcttcaa 295  Q
    || || || |   |||||| ||| |||||    |||||||||||||||||||||||||| | ||||||    
T  41322277 agaaagtagtggtgctattaggaagatttgaaattgcagatttgtatccttctattaaattgcttcaa 41322344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 14 - 134
Target Start/End: Original strand, 41369565 - 41369685
Alignment:
Q  14 atatgtgtcgaagagctattaagtgcaaaacgtgtcgaatcatttaggtccattagagaagaagaggtgtcaaatcttgttaaatcaataactgcaagtg 113  Q
    |||||||| | ||||||||||| |||||| |||||| |||||||||||||||| |||||||||||||| |||   || |||||||||||| || |  |||    
T  41369565 atatgtgttgtagagctattaaatgcaaagcgtgtccaatcatttaggtccataagagaagaagaggtttcatcactagttaaatcaatatctactggtg 41369664  T
Q  114 aaggatcagttgttaatctca 134  Q
    ||| || ||||||| ||||||    
T  41369665 aagcattagttgttgatctca 41369685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 25 - 137
Target Start/End: Original strand, 41430954 - 41431066
Alignment:
Q  25 agagctattaagtgcaaaacgtgtcgaatcatttaggtccattagagaagaagaggtgtcaaatcttgttaaatcaataactgcaagtgaaggatcagtt 124  Q
    ||||||||||||| ||||| ||||| | ||||||  |||||| |||||||||||||| ||||| || |||||||| |||  | || ||||||||||| ||    
T  41430954 agagctattaagttcaaaatgtgtccagtcatttcagtccataagagaagaagaggtttcaaaactagttaaatccatatgtacatgtgaaggatcaatt 41431053  T
Q  125 gttaatctcactc 137  Q
    |||||||||||||    
T  41431054 gttaatctcactc 41431066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 30 - 96
Target Start/End: Complemental strand, 31185343 - 31185277
Alignment:
Q  30 tattaagtgcaaaacgtgtcgaatcatttaggtccattagagaagaagaggtgtcaaatcttgttaa 96  Q
    ||||||||||||| |||||| ||||||||||||  || |||||||||||||||||||||||||||||    
T  31185343 tattaagtgcaaagcgtgtctaatcatttaggtatataagagaagaagaggtgtcaaatcttgttaa 31185277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 107 - 291
Target Start/End: Original strand, 41286141 - 41286325
Alignment:
Q  107 gcaagtgaaggatcagttgttaatctcactcaaatgattctctcattaacaattgggatgacagcgcggacagcatttggaaaaaagaataaacaccaag 206  Q
    |||||||||||||||||||||||||||||||| | |||| | |||  |||   |||||| || |||||  || | ||||| |||||||| | ||||||||    
T  41286141 gcaagtgaaggatcagttgttaatctcactcagaagattttgtcaacaacctatgggataacggcgcgtgcaacttttgggaaaaagaacatacaccaag 41286240  T
Q  207 aagtgtttaaatcagcaatgaaggaaatatttaagctattgggaggattttcttttgcagatttgtatccttctattaaaattct 291  Q
    |||  || |||| ||||||| |||||  ||| |  ||  ||||||||||||   |||  ||||||||||||||||||||| ||||    
T  41286241 aagcattcaaattagcaatggaggaagcattgagcctgatgggaggattttgcattgttgatttgtatccttctattaaatttct 41286325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 83
Target Start/End: Original strand, 41359838 - 41359895
Alignment:
Q  25 agagctattaagtgcaaaacgtgtcgaatcatttaggtccattagagaagaagaggtgt 83  Q
    |||||||||||||| |||| ||||| |||||||||||||||| ||||||||||| ||||    
T  41359838 agagctattaagtg-aaaatgtgtccaatcatttaggtccataagagaagaagatgtgt 41359895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 215 - 296
Target Start/End: Original strand, 41369703 - 41369784
Alignment:
Q  215 aaatcagcaatgaaggaaatatttaagctattgggaggattttcttttgcagatttgtatccttctattaaaattcttcaaa 296  Q
    |||||||||||| |||||  | | ||| |||||| ||||||||   |||| ||||||||||||||||||||||| |||||||    
T  41369703 aaatcagcaatggaggaatcaataaagttattggaaggattttgcattgctgatttgtatccttctattaaaatacttcaaa 41369784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 32 - 288
Target Start/End: Complemental strand, 17249549 - 17249293
Alignment:
Q  32 ttaagtgcaaaacgtgtcgaatcatttaggtccattagagaagaagaggtgtcaaatcttgttaaatcaataactgcaagtgaaggatcagttgttaatc 131  Q
    |||||||  ||||||||| |||| ||||| ||  | ||||||||||| |||| | |||||||||||||||||  | ||||||||||||  ||||||||||    
T  17249549 ttaagtgttaaacgtgtccaatcgtttagatcggtaagagaagaagaagtgttagatcttgttaaatcaatattttcaagtgaaggatgtgttgttaatc 17249450  T
Q  132 tcactcaaatgattctctcattaacaattgggatgacagcgcggacagcatttggaaaaaagaataaacaccaagaagtgtttaaatcagcaatgaagga 231  Q
    ||||||| | ||||   || ||||||  ||||||    |||||  |||| || || |||| ||| ||||||||| ||||||| |||||||||||  ||||    
T  17249449 tcactcagaagatttcttctttaacatatgggatagtggcgcgagcagctttcgggaaaaggaacaaacaccaacaagtgttcaaatcagcaatagagga 17249350  T
Q  232 aatatttaagctattgggaggattttcttttgcagatttgtatccttctattaaaat 288  Q
    |||| | |   | ||||||||||||| | |||  ||||||||||||||||| |||||    
T  17249349 aatagtgagtttgttgggaggattttgtattgttgatttgtatccttctatcaaaat 17249293  T

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