View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6288_high_7 (Length: 215)
Name: NF6288_high_7
Description: NF6288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6288_high_7 |
 | |
|
| [»] chr2 (4 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 7 - 215
Target Start/End: Complemental strand, 28464606 - 28464398
Alignment:
| Q |
7 |
gtcataccaaatagctagcatgaaaagtgcattaggaagttggtaaaacccaaatgcaaaatctcttgaaggagagagccatcgggttgtcccattgcca |
106 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28464606 |
gtcataccaaatagctagcaagaaaagtgcattaggaagttggtaaaacccaaatgcaaaatctcttgaaggagagagccatcgggttgtcccattgcca |
28464507 |
T |
|
| Q |
107 |
gctgtaagtgactcaccaacactcacactcacaccttgatccaatgattttaagctgcatataatacaataataattcatttatctatcagtacttgtat |
206 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28464506 |
gctgtaagtgactcaccaacactgacactcaccccttgatccaatgattttaagctgcatataatacaataataattcatttatctatcagtacttgtat |
28464407 |
T |
|
| Q |
207 |
ttgatgatt |
215 |
Q |
| |
|
||||||||| |
|
|
| T |
28464406 |
ttgatgatt |
28464398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 7 - 167
Target Start/End: Complemental strand, 28486380 - 28486220
Alignment:
| Q |
7 |
gtcataccaaatagctagcatgaaaagtgcattaggaagttggtaaaacccaaatgcaaaatctcttgaaggagagagccatcgggttgtcccattgcca |
106 |
Q |
| |
|
||||||||| |||||||||| |||||| ||| ||||||||||||||| |||||||||||||||| |||||||| ||||||||| |||||| |||| ||| |
|
|
| T |
28486380 |
gtcataccatatagctagcaagaaaagatcatcaggaagttggtaaaatccaaatgcaaaatctcctgaaggagtgagccatcgtgttgtctcatttcca |
28486281 |
T |
|
| Q |
107 |
gctgtaagtgactcaccaacactcacactcacaccttgatccaatgattttaagctgcata |
167 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
28486280 |
gcagtaagtgactcaccaacactcacactcacaccttgatccaatgattctaagctgcata |
28486220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 7 - 167
Target Start/End: Complemental strand, 28443757 - 28443603
Alignment:
| Q |
7 |
gtcataccaaatagctagcatgaaaagtgcattaggaagttggtaaaacccaaatgcaaaatctcttgaaggagagagccatcgggttgtcccattgcca |
106 |
Q |
| |
|
||||||||| |||||||||| |||||| ||||||||||||||||||| ||||||| |||||||| ||||||||||| ||| || ||||| ||| ||||| |
|
|
| T |
28443757 |
gtcataccatatagctagcaagaaaagctcattaggaagttggtaaaatccaaatgaaaaatctcctgaaggagagaaccaacgagttgtgccactgcca |
28443658 |
T |
|
| Q |
107 |
gctgtaagtgactcaccaacactcacactcacaccttgatccaatgattttaagctgcata |
167 |
Q |
| |
|
|| |||||||||||||| ||| | ||||||||||||||||||| ||||||||||| |
|
|
| T |
28443657 |
gcaataagtgactcacca------acaattacaccttgatccaatgattctaagctgcata |
28443603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 9 - 135
Target Start/End: Complemental strand, 28436522 - 28436396
Alignment:
| Q |
9 |
cataccaaatagctagcatgaaaagtgcattaggaagttggtaaaacccaaatgcaaaatctcttgaaggagagagccatcgggttgtcccattgccagc |
108 |
Q |
| |
|
||||||| |||||||||| |||||| ||| |||||||||||||| |||||||| ||||||| |||||||||||||| || ||||||||||| ||||| |
|
|
| T |
28436522 |
cataccatatagctagcaagaaaagctgatttggaagttggtaaaatccaaatgcgaaatctcccgaaggagagagccaacgagttgtcccatttccagc |
28436423 |
T |
|
| Q |
109 |
tgtaagtgactcaccaacactcacact |
135 |
Q |
| |
|
|| ||||| ||||| | ||||||||| |
|
|
| T |
28436422 |
agtgagtgagtcacctagactcacact |
28436396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University