View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6288_low_1 (Length: 624)

Name: NF6288_low_1
Description: NF6288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6288_low_1
NF6288_low_1
[»] chr5 (27 HSPs)
chr5 (333-611)||(41337139-41337417)
chr5 (17-243)||(41337480-41337706)
chr5 (31-250)||(41332666-41332885)
chr5 (43-250)||(41328733-41328940)
chr5 (45-250)||(41286859-41287063)
chr5 (17-213)||(31177911-31178107)
chr5 (17-212)||(31187974-31188169)
chr5 (43-250)||(41316692-41316899)
chr5 (45-195)||(41366900-41367050)
chr5 (17-250)||(41324756-41324989)
chr5 (45-176)||(41310967-41311102)
chr5 (384-597)||(31188434-31188647)
chr5 (394-597)||(31178399-31178602)
chr5 (385-597)||(31225166-31225378)
chr5 (338-506)||(41316335-41316503)
chr5 (338-583)||(41332238-41332483)
chr5 (45-190)||(41431967-41432112)
chr5 (414-600)||(41369731-41369918)
chr5 (338-446)||(41286404-41286512)
chr5 (17-222)||(31225599-31225804)
chr5 (338-601)||(41366400-41366660)
chr5 (338-506)||(41328302-41328470)
chr5 (338-588)||(41324322-41324572)
chr5 (100-197)||(14235865-14235962)
chr5 (342-506)||(41310595-41310759)
chr5 (455-500)||(41431274-41431319)
chr5 (557-597)||(41286280-41286320)
[»] chr4 (2 HSPs)
chr4 (17-240)||(17248791-17249014)
chr4 (338-598)||(17249076-17249336)


Alignment Details
Target: chr5 (Bit Score: 271; Significance: 1e-151; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 333 - 611
Target Start/End: Complemental strand, 41337417 - 41337139
Alignment:
Q  333 agtaaactaacctgaatgactgattttatattttcatcagtcaagggttgttgtgagtgaacattttcatgttgaaccttgagaagaacatcaactaggt 432  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41337417 agtaaactaacctgaatgactgattttatattttcatcagtcaagggttgttgtgagtgaacattttcatgttgaaccttgagaagaacatcaactaggt 41337318  T
Q  433 cttcatccttgcttgttttactgtgattgtttctatgatcattgatgatgtcttgcaatatcctatcaatctctccttgtaatctctcaactctggtctt 532  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41337317 cttcatccttgcttgttttactgtgattgtttctatgatcattgatgatgtcttgcaatatcctatcaatctctccttgtaatctctcaactctggtctt 41337218  T
Q  533 cactctacttaccttttgaagtattttaatagaaggatacaaatcagcaatacaaaattctcccaataggccctatgct 611  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||    
T  41337217 cactctacttaccttttgaagtattttaatagaaggatacaagtcagcaatacaaaattctcccaataggcccaatgct 41337139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 17 - 243
Target Start/End: Complemental strand, 41337706 - 41337480
Alignment:
Q  17 acaaaggtacagtaggatgtagcctaaatgtttctttgatgacacactttaagtatgtcaactgttgcaactctgtctcgtctacatacccctttttatc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41337706 acaaaggtacagtaggatgtagcctaaatgtttctttgatgacacactttaagtatgtcaactgttgcaactctgtctcgtctacatacccctttttatc 41337607  T
Q  117 aaacactcttcttacctcaacttgtgcttcttccattactattgggttctttatcatctccgacatcgcccatagcacaattcctgacgatgtttcgctg 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41337606 aaacactcttcttacctcaacttgtgcttcttccattactattgggttctttatcatctccgacatcgcccatagcacaattcctgacgatgtttcgctg 41337507  T
Q  217 ccagcaatgaacaagtcctgcaaatgg 243  Q
    |||||||||||||||||||||||||||    
T  41337506 ccagcaatgaacaagtcctgcaaatgg 41337480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 31 - 250
Target Start/End: Complemental strand, 41332885 - 41332666
Alignment:
Q  31 ggatgtagcctaaatgtttctttgatgacacactttaagtatgtcaactgttgcaactctgtctcgtctacatacccctttttatcaaacactcttctta 130  Q
    ||||||| ||| ||||||||||||| |||| ||||||||||| |||| || |||||||||| ||| || |||||||||||||||||||||||||||||||    
T  41332885 ggatgtaacctcaatgtttctttgacgacagactttaagtatatcaattggtgcaactctgactcatccacatacccctttttatcaaacactcttctta 41332786  T
Q  131 cctcaacttgtgcttcttccattactattgggttctttatcatctccgacatcgcccatagcacaattcctgacgatgtttcgctgccagcaatgaacaa 230  Q
    | ||||  ||||||||||||| |||  |||||||||||| |||||| ||||||||||||| ||  |   |||||||||||||| | |||||||||||||     
T  41332785 cttcaatctgtgcttcttccaatacctttgggttctttaccatctcagacatcgcccataacaatacctctgacgatgtttcggtaccagcaatgaacat 41332686  T
Q  231 gtcctgcaaatggaataaca 250  Q
     |||| |||||||| |||||    
T  41332685 atcctacaaatggattaaca 41332666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 43 - 250
Target Start/End: Complemental strand, 41328940 - 41328733
Alignment:
Q  43 aatgtttctttgatgacacactttaagtatgtcaactgttgcaactctgtctcgtctacatacccctttttatcaaacactcttcttacctcaacttgtg 142  Q
    |||||||||||||||||  ||||||||||| |||| || |||||||||||||| || |||||| ||||||||||||||||||| ||||| ||| ||||||    
T  41328940 aatgtttctttgatgacggactttaagtatatcaattggtgcaactctgtctcatccacatactcctttttatcaaacactctacttacttcatcttgtg 41328841  T
Q  143 cttcttccattactattgggttctttatcatctccgacatcgcccatagcacaattcctgacgatgtttcgctgccagcaatgaacaagtcctgcaaatg 242  Q
    |||||||||||||  |||||||||| | |||||| ||||||||||||| || ||    ||||||||||||| | ||||||| ||||| ||||| ||||||    
T  41328840 cttcttccattacctttgggttcttcaccatctcagacatcgcccataacagaacctgtgacgatgtttcggtaccagcaaggaacatgtcctacaaatg 41328741  T
Q  243 gaataaca 250  Q
    || |||||    
T  41328740 gattaaca 41328733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 45 - 250
Target Start/End: Complemental strand, 41287063 - 41286859
Alignment:
Q  45 tgtttctttgatgacacactttaagtatgtcaactgttgcaactctgtctcgtctacatacccctttttatcaaacactcttcttacctcaacttgtgct 144  Q
    |||||||||||| ||| |||| |||||| |||| || ||||||||||||||  | |||||||||||| ||||||||||||||||||||||| ||||||||    
T  41287063 tgtttctttgataacagacttcaagtatatcaattggtgcaactctgtctcaaccacatacccctttctatcaaacactcttcttacctcagcttgtgct 41286964  T
Q  145 tcttccattactattgggttctttatcatctccgacatcgcccatagcacaattcctgacgatgtttcgctgccagcaatgaacaagtcctgcaaatgga 244  Q
    | |||||| ||  |||| ||||||| |||||| |||||| | |||| ||||   ||||||||||||||||  |||||| ||||||||||||| |||||||    
T  41286963 t-ttccatcacctttggattctttaccatctcagacatccctcataacacagcccctgacgatgtttcgccaccagcagtgaacaagtcctgtaaatgga 41286865  T
Q  245 ataaca 250  Q
     |||||    
T  41286864 ttaaca 41286859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 17 - 213
Target Start/End: Original strand, 31177911 - 31178107
Alignment:
Q  17 acaaaggtacagtaggatgtagcctaaatgtttctttgatgacacactttaagtatgtcaactgttgcaactctgtctcgtctacatacccctttttatc 116  Q
    ||||||||| || |||||| | ||| |||||||||||||| | | ||||||||||| |||| || ||||||||||| || || |||| ||||||||||||    
T  31177911 acaaaggtaaagaaggatgcaaccttaatgtttctttgattatagactttaagtatatcaaatggtgcaactctgtttcatcgacatgcccctttttatc 31178010  T
Q  117 aaacactcttcttacctcaacttgtgcttcttccattactattgggttctttatcatctccgacatcgcccatagcacaattcctgacgatgtttcg 213  Q
    ||||||| ||||||| ||| |||||||||| | |||||   ||||||||||||||||||| || ||| |||||| ||||| |||||| |||||||||    
T  31178011 aaacacttttcttacttcagcttgtgcttccttcattatctttgggttctttatcatctcagatatcccccataacacaactcctgatgatgtttcg 31178107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 17 - 212
Target Start/End: Original strand, 31187974 - 31188169
Alignment:
Q  17 acaaaggtacagtaggatgtagcctaaatgtttctttgatgacacactttaagtatgtcaactgttgcaactctgtctcgtctacatacccctttttatc 116  Q
    ||||||| |||| |||||||||||| ||||||||| |||| | | ||||||||||| |||| || ||||||||||| || || |||||||||||||||||    
T  31187974 acaaaggcacagaaggatgtagcctcaatgtttctctgattatagactttaagtatatcaattggtgcaactctgtttcatcgacatacccctttttatc 31188073  T
Q  117 aaacactcttcttacctcaacttgtgcttcttccattactattgggttctttatcatctccgacatcgcccatagcacaattcctgacgatgtttc 212  Q
    ||||||| ||||||| ||| |||||||||  |||||||   |||||||||||| |||||| || ||| |||||||||||   || |||||||||||    
T  31188074 aaacacttttcttacttcagcttgtgctttctccattatctttgggttctttaccatctcagatatcccccatagcacagccccggacgatgtttc 31188169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 43 - 250
Target Start/End: Complemental strand, 41316899 - 41316692
Alignment:
Q  43 aatgtttctttgatgacacactttaagtatgtcaactgttgcaactctgtctcgtctacatacccctttttatcaaacactcttcttacctcaacttgtg 142  Q
    |||||||||||||||||| ||||||||||| |||| || | |||||||||||| || ||||| |||||||||||||||||||||||||| ||| ||||||    
T  41316899 aatgtttctttgatgacagactttaagtatatcaattggtacaactctgtctcatccacatatccctttttatcaaacactcttcttacttcagcttgtg 41316800  T
Q  143 cttcttccattactattgggttctttatcatctccgacatcgcccatagcacaattcctgacgatgtttcgctgccagcaatgaacaagtcctgcaaatg 242  Q
    ||| |||||||||  ||| ||| |||| |||| | ||||||||||| | ||||    |||||||||||||  | ||||||   |||| ||||||||||||    
T  41316799 cttgttccattacatttgagttttttaccatcgcagacatcgcccaaatcacagcctctgacgatgtttcagtaccagcaccaaacatgtcctgcaaatg 41316700  T
Q  243 gaataaca 250  Q
    || |||||    
T  41316699 gattaaca 41316692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 45 - 195
Target Start/End: Complemental strand, 41367050 - 41366900
Alignment:
Q  45 tgtttctttgatgacacactttaagtatgtcaactgttgcaactctgtctcgtctacatacccctttttatcaaacactcttcttacctcaacttgtgct 144  Q
    |||||||||||||||  | ||||||||| |||| || |||||||||||||| |  ||||| |||||||||||||||||||||||||||||||||||||||    
T  41367050 tgtttctttgatgacggattttaagtatatcaattggtgcaactctgtctcattcacatatccctttttatcaaacactcttcttacctcaacttgtgct 41366951  T
Q  145 tcttccattactattgggttctttatcatctccgacatcgcccatagcaca 195  Q
     |||||||||| || || ||||||| |||||| ||||||| ||||| ||||    
T  41366950 gcttccattaccatcggattctttaccatctcagacatcgtccataacaca 41366900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 17 - 250
Target Start/End: Complemental strand, 41324989 - 41324756
Alignment:
Q  17 acaaaggtacagtaggatgtagcctaaatgtttctttgatgacacactttaagtatgtcaactgttgcaactctgtctcgtctacatacccctttttatc 116  Q
    |||| ||||| || ||||||||||| | |||||| ||||| ||| | ||||||||| |||| || |||||||||||||| || ||| |||||||  ||||    
T  41324989 acaacggtacggttggatgtagcctcattgtttccttgatcacagattttaagtatatcaattggtgcaactctgtctcatccacaaaccccttcctatc 41324890  T
Q  117 aaacactcttcttacctcaacttgtgcttcttccattactattgggttctttatcatctccgacatcgcccatagcacaattcctgacgatgtttcgctg 216  Q
    ||| ||||||||||||||| |||||||||||||||| ||  |||| ||||||| |||||| || |||||||||| |||| |   ||||||||||||| |     
T  41324889 aaaaactcttcttacctcagcttgtgcttcttccatcacctttggattctttaccatctcagatatcgcccataacacagtcgttgacgatgtttcggta 41324790  T
Q  217 ccagcaatgaacaagtcctgcaaatggaataaca 250  Q
    ||||||  ||| | ||||| |||||||| |||||    
T  41324789 ccagcatcgaatatgtcctacaaatggattaaca 41324756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 45 - 176
Target Start/End: Complemental strand, 41311102 - 41310967
Alignment:
Q  45 tgtttctttgatgacacactttaagtatgtcaactgttgcaactctgtctcgtc----tacatacccctttttatcaaacactcttcttacctcaacttg 140  Q
    |||||||||||||||| ||||||||||| ||||| | ||||||||  |||| ||    || |||||||||||||||||||||||||||||| ||||||||    
T  41311102 tgtttctttgatgacaaactttaagtatatcaacaggtgcaactccatctcatccacatatatacccctttttatcaaacactcttcttacttcaacttg 41311003  T
Q  141 tgcttcttccattactattgggttctttatcatctc 176  Q
    |||||||||||||||  |||||||||||| ||||||    
T  41311002 tgcttcttccattacctttgggttctttaccatctc 41310967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 384 - 597
Target Start/End: Original strand, 31188434 - 31188647
Alignment:
Q  384 tgtgagtgaacattttcatgttgaaccttgagaagaacatcaactaggtcttcatccttgcttgttttactgtgattgtttctatgatcattgatgatgt 483  Q
    ||||||||| ||||||| ||||||| ||||||||||  ||||||||| |||||||||||||||  ||   ||||| ||||| ||||||||  |||||| |    
T  31188434 tgtgagtgatcattttcctgttgaatcttgagaagagtatcaactagatcttcatccttgctttcttccttgtgaatgtttttatgatcaacgatgatat 31188533  T
Q  484 cttgcaatatcctatcaatctctccttgtaatctctcaactctggtcttcactctacttaccttttgaagtattttaatagaaggatacaaatcagcaat 583  Q
    ||||||||||| |||||||||||   || |   | |||||| | |||||| | ||||| |||  |||||  ||||||| ||||||||||| |||||||||    
T  31188534 cttgcaatatcatatcaatctctttatgaagcttttcaactttcgtcttcgccctactcacccattgaaacattttaacagaaggatacacatcagcaat 31188633  T
Q  584 acaaaattctccca 597  Q
    ||||||||||||||    
T  31188634 acaaaattctccca 31188647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 394 - 597
Target Start/End: Original strand, 31178399 - 31178602
Alignment:
Q  394 cattttcatgttgaaccttgagaagaacatcaactaggtcttcatccttgcttgttttactgtgattgtttctatgatcattgatgatgtcttgcaatat 493  Q
    ||||||| ||||||| ||||| |||  |||||||||| |||||||||||||||  ||   ||||| ||||| ||||||||| || ||| |||||||||||    
T  31178399 cattttcctgttgaatcttgataagtgcatcaactagatcttcatccttgctttcttccttgtgaatgtttttatgatcatcgacgatatcttgcaatat 31178498  T
Q  494 cctatcaatctctccttgtaatctctcaactctggtcttcactctacttaccttttgaagtattttaatagaaggatacaaatcagcaatacaaaattct 593  Q
    | |||||||||||   || ||  | |||| | |||||||||| | ||| |||  |||||| ||||||||||||||||||| |||||||||||||||| ||    
T  31178499 catatcaatctctttatgaaacttttcaaatttggtcttcaccccactcacccgttgaagcattttaatagaaggatacacatcagcaatacaaaatcct 31178598  T
Q  594 ccca 597  Q
    ||||    
T  31178599 ccca 31178602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 385 - 597
Target Start/End: Complemental strand, 31225378 - 31225166
Alignment:
Q  385 gtgagtgaacattttcatgttgaaccttgagaagaacatcaactaggtcttcatccttgcttgttttactgtgattgtttctatgatcattgatgatgtc 484  Q
    |||||||  ||||||| ||||| | ||||||||||  ||||||||| |||||||||||||||  ||   ||||| ||||| ||||||||| |||||| ||    
T  31225378 gtgagtgctcattttcctgttgtatcttgagaagagtatcaactagatcttcatccttgctttcttccttgtgaatgtttttatgatcatcgatgatatc 31225279  T
Q  485 ttgcaatatcctatcaatctctccttgtaatctctcaactctggtcttcactctacttaccttttgaagtattttaatagaaggatacaaatcagcaata 584  Q
    |||||||||| |||||||||||   || |   | |||||| |||||||| | ||||| |||  |||||| ||||| ||||||||||||| |||| |||||    
T  31225278 ttgcaatatcatatcaatctctttatgaagcttttcaactttggtcttcgccctactcacccattgaagcatttttatagaaggatacacatcaacaata 31225179  T
Q  585 caaaattctccca 597  Q
    |||||| ||||||    
T  31225178 caaaatcctccca 31225166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 338 - 506
Target Start/End: Complemental strand, 41316503 - 41316335
Alignment:
Q  338 actaacctgaatgactgattttatattttcatcagtcaagggttgttgtgagtgaacattttcatgttgaaccttgagaagaacatcaactaggtcttca 437  Q
    ||||||||| |||| |||||||||||| |||||||| || || ||||||||||||  |||||| ||||||| ||||||||||||||| ||||| ||||||    
T  41316503 actaacctggatgattgattttatattgtcatcagttaaaggatgttgtgagtgataattttcctgttgaatcttgagaagaacatctactagatcttca 41316404  T
Q  438 tccttgcttgttttactgtgattgtttctatgatcattgatgatgtcttgcaatatcctatcaatctct 506  Q
    || ||||||  ||   ||||| || || | ||||| | |||||||||||||||| || |||||| ||||    
T  41316403 tcattgctttcttccttgtgaatgcttttgtgatcgtcgatgatgtcttgcaatgtcatatcaagctct 41316335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 338 - 583
Target Start/End: Complemental strand, 41332483 - 41332238
Alignment:
Q  338 actaacctgaatgactgattttatattttcatcagtcaagggttgttgtgagtgaacattttcatgttgaaccttgagaagaacatcaactaggtcttca 437  Q
    ||||||||| |||| |||||| ||||| ||||| || || || |||| ||||| |  |||||| ||||||| ||||||||||||||| ||||| ||||||    
T  41332483 actaacctggatgattgatttcatattgtcatcggttaaaggatgttctgagtaataattttcctgttgaatcttgagaagaacatctactagatcttca 41332384  T
Q  438 tccttgcttgttttactgtgattgtttctatgatcattgatgatgtcttgcaatatcctatcaatctctccttgtaatctctcaactctggtcttcactc 537  Q
    || ||||||| ||   ||||| || |||| ||||| | |||||||||||||| |||| |||||| |||||  || | | | || | | |||||||| | |    
T  41332383 tcgttgcttgcttccttgtgaatgcttctgtgatcgtcgatgatgtcttgcattatcatatcaagctctctatgaattttttccattttggtcttctccc 41332284  T
Q  538 tacttaccttttgaagtattttaatagaaggatacaaatcagcaat 583  Q
    |||| |    |||||| ||||||||||||||||||||||| |||||    
T  41332283 tactcatgcattgaagcattttaatagaaggatacaaatctgcaat 41332238  T

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Target: chr5; HSP #17
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 45 - 190
Target Start/End: Complemental strand, 41432112 - 41431967
Alignment:
Q  45 tgtttctttgatgacacactttaagtatgtcaactgttgcaactctgtctcgtctacatacccctttttatcaaacactcttcttacctcaacttgtgct 144  Q
    |||||||||||||| | |||| |||||| |||| |  |||||||| ||||| || |||||||| ||  ||||||||||||||||||||||| ||||||||    
T  41432112 tgtttctttgatgatagacttcaagtatatcaattagtgcaactcagtctcatccacataccctttcatatcaaacactcttcttacctcagcttgtgct 41432013  T
Q  145 tcttccattactattgggttctttatcatctccgacatcgcccata 190  Q
    |||||||| ||  | ||||||||   |||||| |||||||||||||    
T  41432012 tcttccatcacattcgggttcttcgccatctcagacatcgcccata 41431967  T

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Target: chr5; HSP #18
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 414 - 600
Target Start/End: Complemental strand, 41369918 - 41369731
Alignment:
Q  414 agaagaacatcaactaggtcttcatccttgcttgttttactgtgattgtttctatgatcattgatgatgtcttgcaatatcctatcaatctctcct-tgt 512  Q
    ||||||||||||||||||||||| |||||| ||  ||  || ||||||||| | |||||||||||||| |||||||||||  |||||  |  | || ||     
T  41369918 agaagaacatcaactaggtcttcttccttgatttcttctctatgattgtttttgtgatcattgatgatatcttgcaatataatatcatgcctttctctga 41369819  T
Q  513 aatctctcaactctggtcttcactctacttaccttttgaagtattttaatagaaggatacaaatcagcaatacaaaattctcccaata 600  Q
    | | | || | | |||||||  | ||||||||| ||||||||||||||||||||||||||||||||||||| |||||| || ||||||    
T  41369818 agtttttccattttggtctttgccctacttaccctttgaagtattttaatagaaggatacaaatcagcaatgcaaaatccttccaata 41369731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 338 - 446
Target Start/End: Complemental strand, 41286512 - 41286404
Alignment:
Q  338 actaacctgaatgactgattttatattttcatcagtcaagggttgttgtgagtgaacattttcatgttgaaccttgagaagaacatcaactaggtcttca 437  Q
    ||||||||| ||||||| ||||| ||| |||||||||||||| |||| ||||||  || |||| ||||||| ||||||||||||||||| ||| ||||||    
T  41286512 actaacctggatgactgcttttaaattatcatcagtcaagggatgttatgagtgctcactttcctgttgaatcttgagaagaacatcaattagatcttca 41286413  T
Q  438 tccttgctt 446  Q
    || ||||||    
T  41286412 tctttgctt 41286404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 17 - 222
Target Start/End: Complemental strand, 31225804 - 31225599
Alignment:
Q  17 acaaaggtacagtaggatgtagcctaaatgtttctttgatgacacactttaagtatgtcaactgttgcaactctgtctcgtctacatacccctttttatc 116  Q
    |||||||| |||  |||||||  || ||||||||| | || | | ||||||||||| | || || ||||||||||| || || ||||  |||||||||||    
T  31225804 acaaaggtgcagatggatgtaatctcaatgtttctctaattatagactttaagtatattaattggtgcaactctgtttcatcgacatgtccctttttatc 31225705  T
Q  117 aaacactcttcttacctcaacttgtgcttcttccattactattgggttctttatcatctccgacatcgcccatagcacaattcctgacgatgtttcgctg 216  Q
    |||||   ||||||| ||| |||||||||| |||||||   |||||||||||| |||||| || ||| |||||| |||||  ||||| || ||||||||     
T  31225704 aaacatgtttcttacttcagcttgtgcttcctccattatctttgggttctttaccatctcagatatcccccataacacaacccctgatgacgtttcgcta 31225605  T
Q  217 ccagca 222  Q
    ||||||    
T  31225604 ccagca 31225599  T

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Target: chr5; HSP #21
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 338 - 601
Target Start/End: Complemental strand, 41366660 - 41366400
Alignment:
Q  338 actaacctgaatgactgattttatattttcatcagtcaagggttgttgtgagtgaacattttcatgttgaaccttgagaagaacatcaactaggtcttca 437  Q
    ||||||||| ||||| ||||||||||| || || |||||||| |||||||||||   |||| || |||||| ||||||||||||||| ||||| || |||    
T  41366660 actaacctggatgaccgattttatattgtcgtcggtcaagggatgttgtgagtg---atttacacgttgaatcttgagaagaacatctactagatcatca 41366564  T
Q  438 tccttgcttgttttactgtgattgtttctatgatcattgatgatgtcttgcaatatcctatcaatctctccttgtaatctctcaactctggtcttcactc 537  Q
    | ||| || | |||  ||||| |  || | ||||||| |||||| |||||||||||| ||||| ||||||  || | | | |||| | |  || |    |    
T  41366563 ttcttcctagctttcttgtgactacttttgtgatcatcgatgatctcttgcaatatcatatcagtctctctatgaagtttttcaagttttttccttggcc 41366464  T
Q  538 tacttaccttttgaagtattttaatagaaggatacaaatcagcaatacaaaattctcccaatag 601  Q
     ||||| | ||||||| ||||||||||||||||||||||| |||| | ||||| ||||||||||    
T  41366463 aacttaacatttgaagaattttaatagaaggatacaaatctgcaaaagaaaatcctcccaatag 41366400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 338 - 506
Target Start/End: Complemental strand, 41328470 - 41328302
Alignment:
Q  338 actaacctgaatgactgattttatattttcatcagtcaagggttgttgtgagtgaacattttcatgttgaaccttgagaagaacatcaactaggtcttca 437  Q
    ||||||||| |||| |||||| ||||| ||||| || || || |||| |||||||  |||||| ||||||| ||||||||||||||| ||||| ||||||    
T  41328470 actaacctggatgattgatttcatattgtcatcggttaaaggatgttctgagtgataattttcctgttgaatcttgagaagaacatctactagatcttca 41328371  T
Q  438 tccttgcttgttttactgtgattgtttctatgatcattgatgatgtcttgcaatatcctatcaatctct 506  Q
    || ||||||| ||   ||||| |  |||| ||||| | ||||||||||||   |||| |||||||||||    
T  41328370 tcattgcttgcttccttgtgaatacttctgtgatcgtcgatgatgtcttgtgctatcatatcaatctct 41328302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 338 - 588
Target Start/End: Complemental strand, 41324572 - 41324322
Alignment:
Q  338 actaacctgaatgactgattttatattttcatcagtcaagggttgttgtgagtgaacattttcatgttgaaccttgagaagaacatcaactaggtcttca 437  Q
    ||||||||| |||| ||| |||||||| ||||| || || || ||||||||||||  |||||| ||||||| ||||||||||||||| ||||| | |||     
T  41324572 actaacctggatgattgactttatattgtcatcggttaaaggatgttgtgagtgataattttcctgttgaatcttgagaagaacatctactagatattct 41324473  T
Q  438 tccttgcttgttttactgtgattgtttctatgatcattgatgatgtcttgcaatatcctatcaatctctccttgtaatctctcaactctggtcttcactc 537  Q
    || |||||   ||   ||||| || || | ||||| | ||| ||||||||||||||| |||||||||||   || | | | || | | ||| |||| | |    
T  41324472 tcattgctatcttccttgtgaatgcttttgtgatcgtcgataatgtcttgcaatatcatatcaatctctttgtgaagtttttccattttggccttcgccc 41324373  T
Q  538 tacttaccttttgaagtattttaatagaaggatacaaatcagcaatacaaa 588  Q
    |||| ||   |||||| | |||||||||||||||||||||| |||||||||    
T  41324372 tactcacgcattgaagcaatttaatagaaggatacaaatcaacaatacaaa 41324322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 100 - 197
Target Start/End: Complemental strand, 14235962 - 14235865
Alignment:
Q  100 acatacccctttttatcaaacactcttcttacctcaacttgtgcttcttccattactattgggttctttatcatctccgacatcgcccatagcacaat 197  Q
    |||||||||||| |||||||| | |||||||||||| |||||||||||||||| ||  | ||||||||||  ||||| |||||| || ||| ||||||    
T  14235962 acatacccctttctatcaaactcccttcttacctcagcttgtgcttcttccatcaccctagggttctttacaatctcagacatccccaataacacaat 14235865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 342 - 506
Target Start/End: Complemental strand, 41310759 - 41310595
Alignment:
Q  342 acctgaatgactgattttatattttcatcagtcaagggttgttgtgagtgaacattttcatgttgaaccttgagaagaacatcaactaggtcttcatcct 441  Q
    ||||| |||| |||||| ||||| ||||| || || || |||| |||||||  |||||| |||| || ||||||||||||||| ||||| |||||||| |    
T  41310759 acctggatgattgatttcatattgtcatccgttaaaggatgttctgagtgataattttcctgtttaatcttgagaagaacatctactagatcttcatcat 41310660  T
Q  442 tgcttgttttactgtgattgtttctatgatcattgatgatgtcttgcaatatcctatcaatctct 506  Q
    ||||   ||   || || || || | ||||| | ||||||||||||||||||| ||| |||||||    
T  41310659 tgctatcttccttgcgaatgcttttgtgatcgtcgatgatgtcttgcaatatcatataaatctct 41310595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 455 - 500
Target Start/End: Complemental strand, 41431319 - 41431274
Alignment:
Q  455 gtgattgtttctatgatcattgatgatgtcttgcaatatcctatca 500  Q
    |||| ||||| ||||||||||||||||||||||||||||| |||||    
T  41431319 gtgactgtttttatgatcattgatgatgtcttgcaatatcgtatca 41431274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 557 - 597
Target Start/End: Complemental strand, 41286320 - 41286280
Alignment:
Q  557 tttaatagaaggatacaaatcagcaatacaaaattctccca 597  Q
    |||||||||||||||||||||| |||| |||||| ||||||    
T  41286320 tttaatagaaggatacaaatcaacaatgcaaaatcctccca 41286280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 80; Significance: 3e-37; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 17 - 240
Target Start/End: Original strand, 17248791 - 17249014
Alignment:
Q  17 acaaaggtacagtaggatgtagcctaaatgtttctttgatgacacactttaagtatgtcaactgttgcaactctgtctcgtctacatacccctttttatc 116  Q
    |||| |||||| ||||||| ||||| | |||||||||||||||| | ||||||||| | || || | |||||| || || ||||||||||||||| ||||    
T  17248791 acaatggtacaataggatgcagcctcagtgtttctttgatgacagaatttaagtatattaattgatccaactccgtttcatctacatacccctttctatc 17248890  T
Q  117 aaacactcttcttacctcaacttgtgcttcttccattactattgggttctttatcatctccgacatcgcccatagcacaattcctgacgatgtttcgctg 216  Q
    ||| || |||||||||||| |||||||| ||||||| ||  ||||||| ||||| ||||| |||||  |||||| |||||| || ||||||||||||||     
T  17248891 aaaaacacttcttacctcagcttgtgctgcttccatcacctttgggttttttattatctcagacattccccataacacaatcccagacgatgtttcgcta 17248990  T
Q  217 ccagcaatgaacaagtcctgcaaa 240  Q
    ||||||   |||| ||||||||||    
T  17248991 ccagcagcaaacatgtcctgcaaa 17249014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 338 - 598
Target Start/End: Original strand, 17249076 - 17249336
Alignment:
Q  338 actaacctgaatgactgattttatattttcatcagtcaagggttgttgtgagtgaacattttcatgttgaaccttgagaagaacatcaactaggtcttca 437  Q
    ||||||||| |||| |||||||||||| ||||||||||| |  | ||||| || | || |||| ||||||| ||||| |||| |||||||||| ||||||    
T  17249076 actaacctggatgattgattttatattgtcatcagtcaatgaattttgtgggtaatcactttcttgttgaatcttgataagagcatcaactagatcttca 17249175  T
Q  438 tccttgcttgttttactgtgattgtttctatgatcattgatgatgtcttgcaatatcctatcaatctctccttgtaatctctcaactctggtcttcactc 537  Q
    ||||||| || |||  | ||    ||||| |||||||  ||||| |||||||||||| ||||||| || |  || | | | || | | |||| |||||      
T  17249176 tccttgcgtgctttgttttgtccatttctgtgatcatctatgatatcttgcaatatcatatcaatttccctatgaagtttttccattttggttttcacct 17249275  T
Q  538 tacttaccttttgaagtattttaatagaaggatacaaatcagcaatacaaaattctcccaa 598  Q
     ||||||| ||| ||||||||| |||||||||||||||||| ||||||||||| |||||||    
T  17249276 gacttacccttttaagtattttgatagaaggatacaaatcaacaatacaaaatcctcccaa 17249336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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