View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6288_low_2 (Length: 534)
Name: NF6288_low_2
Description: NF6288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6288_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 163 - 519
Target Start/End: Complemental strand, 4798531 - 4798198
Alignment:
| Q |
163 |
cgtggatatgtatctctccggcttattcttaaagaaagaggttgtcagaatgtatctttactttgttgctgaaaattaagtggtgaaaatgtctttgatg |
262 |
Q |
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| T |
4798531 |
cgtggatatgtatctctccggcttatacttaaagaaagaggttgtcagaatgtatctttactttgttgctgaaaattaagtggtgaaaatgtctttgatg |
4798432 |
T |
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| Q |
263 |
agtagttaccaagttaaattgacttttaagaatgaagctcagtttactaaaaatcaaaatggagagcaagactaattacgctggatataattgatactta |
362 |
Q |
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| T |
4798431 |
agtagttaccaagttaaattgacttttaagaatgaagctcagtttactaaaaatcaaaatggagagcaagactaatta-----gatataattgatactta |
4798337 |
T |
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| Q |
363 |
ccctttgaatacattggaaatgttattcaaacattgcaaaaagtatttcaattccaattgcagctagtgattacagaacacaattggaataatcaatgag |
462 |
Q |
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| T |
4798336 |
ccctttgaatacattgtaaatgttattccaacattgcaaaaagtatttcaattccaattgcagctagtgattacagaac-------------------ag |
4798256 |
T |
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| Q |
463 |
aatttacattaaagatgagaaaatg-aaaaggctagtttaatggtctcccaacttatt |
519 |
Q |
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| T |
4798255 |
aatttacattaaagatgagaaaatgaaaaaggctagtttaatggcctcccaacttatt |
4798198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 27 - 111
Target Start/End: Complemental strand, 4798658 - 4798574
Alignment:
| Q |
27 |
atatgaccattatggatgttacaaaatcatttnnnnnnntaattgaagggaatacgtggatatgaaaaaacacgtgcaatcaatc |
111 |
Q |
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| T |
4798658 |
atatgaccattatggatgttacaaaatcatttaaaaaaataattgaagggaatacgtggatatgaaaaaacacgtgcaatcaatc |
4798574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 401 - 445
Target Start/End: Original strand, 18738220 - 18738264
Alignment:
| Q |
401 |
aaaagtatttcaattccaattgcagctagtgattacagaacacaa |
445 |
Q |
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| T |
18738220 |
aaaattattccaattccaattgcagctagtaattacagaacacaa |
18738264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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