View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6288_low_5 (Length: 251)
Name: NF6288_low_5
Description: NF6288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6288_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 8 - 232
Target Start/End: Original strand, 28463954 - 28464180
Alignment:
| Q |
8 |
cgaaaaatatggaaacatcctcatcaaaaaatgagtaactaaaaccctata--gtctttcttcaaccacgtgatacgaactcaatcgtctataccaagtg |
105 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |||||||||| |||||||| |
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| T |
28463954 |
cgaacaatatggaaacatcctcatcaaaaaatgagtaactaaaaccctataaagtctttcttcaaccacatgatacgaacccaatcgtctagaccaagtg |
28464053 |
T |
|
| Q |
106 |
tatgcatggccttgcatcaagacatcagtaaggtcacagtgtggtgtggagagagcatcagttaatgtttaattaagaaatttattacatattataaaaa |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||| |
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| T |
28464054 |
tatgcatggccttgcatcaagacatcagtaaggtcacagtgtggtgtggagagagaatcggttaatgtttaattaagaaatttattacatattatagaaa |
28464153 |
T |
|
| Q |
206 |
gtactctttccgtcccaaattataagt |
232 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
28464154 |
ctactctttccgtcccaaattataagt |
28464180 |
T |
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