View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6289_high_12 (Length: 347)
Name: NF6289_high_12
Description: NF6289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6289_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 27 - 329
Target Start/End: Original strand, 1002810 - 1003112
Alignment:
| Q |
27 |
tgcgctacatggttcaatgctataatacactgtagacttgattttactgaaatttttaatattattattggattctttacaaaacttttcggacaaatga |
126 |
Q |
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| T |
1002810 |
tgcgctacatggttcaatgctataatacactgtagacttgatttgactgaaatttttaattttattattggattctttacagaacttttcggacaaatga |
1002909 |
T |
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| Q |
127 |
catttttattactgtgaacagagccacatattttgctccgttgatagctcagattaggagacaaagaaaaaagcttagaatgaaattgaacacttttaac |
226 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||| |
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| T |
1002910 |
catttttattactgtgaacagagccacatattttgctctgttgatagctcagattaggagacgaagaaaaaagcttaacatgaaattgaacagttttaac |
1003009 |
T |
|
| Q |
227 |
ccattgacatttgaggcaatggttggtcatcatattgtaagtaaaaatttgttttctttagtataataaactaaataatttccaacattggttcaatatg |
326 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
1003010 |
ccattgacatttgaggcaatggttggtcatcatattgtaagttaaaatttgttttctttagtataataaactaaataatttccaaaattggttcaatatg |
1003109 |
T |
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| Q |
327 |
aca |
329 |
Q |
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| T |
1003110 |
aca |
1003112 |
T |
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