View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6289_high_21 (Length: 252)
Name: NF6289_high_21
Description: NF6289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6289_high_21 |
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Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 33556331 - 33556572
Alignment:
| Q |
1 |
ccgtaccacagtcattgacgtcgcgggagcatgtttccccaatctgttatgaattgttgctcacatgaaacaaaaatatgtccttaaaatcttgatcata |
100 |
Q |
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| T |
33556331 |
ccgtaccacagtcattgacgtcgcgggagcatgtttccccaatctgttatgaattgttgctcacatgaaacaaaaatatgtccttaaaatcttgatcata |
33556430 |
T |
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| Q |
101 |
gattatttgatgaattgaagatgaagagaatatactaacactttgcaacttttgatattaagctttaagaatctcaaatttttagggttaggatgaagtg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33556431 |
gattatttgatgaattgaagatgaagagaatatactaacactttgcaacttttgatattaagctttaagaatctcaaatttttagggttaggatgaagtg |
33556530 |
T |
|
| Q |
201 |
ttaaaatttaattgtgaaatgtctagagtcatgatgcctttg |
242 |
Q |
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| T |
33556531 |
ttaaaatttaattgtgaaatgtctagagtcatgatgcctttg |
33556572 |
T |
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