View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6289_high_29 (Length: 236)
Name: NF6289_high_29
Description: NF6289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6289_high_29 |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 33555979 - 33555757
Alignment:
| Q |
1 |
aaagactttaggaatcaaaataaaggggaatgaaataaatttctaatacatttgaattcagtgaacaatcattttgctaataggtgtcaaaagttctatg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
33555979 |
aaagactttaggaatcaaaataaaggggaatgaaataaatttctaatacatttgaattcagtgaacaatcattttactaataggtgtcaaaagttctatg |
33555880 |
T |
|
| Q |
101 |
tttataattctgtctataattttgcttagtaaaa-nnnnnnnatacttttaatgagccattttctgctgcagaatggtgtgagaggaataatgttagata |
199 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33555879 |
tttataattctgtctataattttgcttagtaaaattttttctatacttttaatgagccattttctgctgcagaatggtgtgagaggaataatgttagata |
33555780 |
T |
|
| Q |
200 |
tgcatgattactatggtgacatt |
222 |
Q |
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||||||||||||||||||||||| |
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| T |
33555779 |
tgcatgattactatggtgacatt |
33555757 |
T |
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