View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6289_high_5 (Length: 450)
Name: NF6289_high_5
Description: NF6289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6289_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-128; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 10 - 254
Target Start/End: Original strand, 40423701 - 40423945
Alignment:
| Q |
10 |
agaacctgtgaaaggggttaagatgcaacaataatgtagtttatcaataacatgattgaagggtgtgtttgatatgttaaaaaccacatcacctaagaat |
109 |
Q |
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| T |
40423701 |
agaaactgtgaaaggggttaagatgcaacaataatgtagtttatcaataacatgattgaagggtgtgcttgatatgttaaaaaccacatcacctaagaat |
40423800 |
T |
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| Q |
110 |
ttttagcggatcaaacacgcctaagacattgaaactaattacttccaaacaatcaaagacagtaccgaacatttaaagccaccatggttgacagggatcg |
209 |
Q |
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| T |
40423801 |
ttttagcggatcaaacacacctaagacattgaaactaattacttccaaacaatcaaagacagtaccgaacatttaaagccaccatggttgacagggatcg |
40423900 |
T |
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| Q |
210 |
ggttagtttacgagcaagtttagacaaactactcaaccagacctt |
254 |
Q |
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| T |
40423901 |
ggttagtttacgagcaagtttagacaaactactcaaccagacctt |
40423945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 270 - 435
Target Start/End: Original strand, 40423971 - 40424136
Alignment:
| Q |
270 |
ttcaaaacatcttgtaataactatgaattttagcagctacatgataaataagcatttcaaattccgatactcttaaaccataatcacaagtcaaaaccaa |
369 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40423971 |
ttcaaaacatcttgtaataactatgaattttagcagctacatgataaataagcatttcaaattccgatactcttaaaccataatcacaagtcaaaaccaa |
40424070 |
T |
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| Q |
370 |
ttttcaccaaaaacaaattcaaattctgctaagcagcgtcaaaatcaacattgaagaattcaaatt |
435 |
Q |
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| T |
40424071 |
ttttcaccaaaaacaaattcaaattctgctaagcagcgtcaaaatcaacattgaagaattcaaatt |
40424136 |
T |
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