View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6289_high_8 (Length: 418)
Name: NF6289_high_8
Description: NF6289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6289_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 174 - 402
Target Start/End: Complemental strand, 24424462 - 24424234
Alignment:
| Q |
174 |
taatggtagatggtttgtgtcagtattcctggtaggtaggaaatagaagtcacctacatttctctcaaacttctagtagccttaggacagtcaagtattt |
273 |
Q |
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| T |
24424462 |
taatggtagatggtttgtgtcagtattcctggtaggtaggaaatagaagtcacctacatttctctcaaacttccagtagccttaggacagtcaagtattt |
24424363 |
T |
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| Q |
274 |
tggttgtttcaagtttcactgcctttgacttcgaatccttgcagatatcaataaaacttggtagaaatcgcagatacatagttctcaaggttggaagcac |
373 |
Q |
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| T |
24424362 |
tgtttgtttcaagtttcactgccttcgacttcaaatcctagcagatatcaataaaacttggtagaaatcgaagatacatagttctcaaggttggaagcac |
24424263 |
T |
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| Q |
374 |
aatttctgatacattattagagttgtctc |
402 |
Q |
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| T |
24424262 |
aatttctgatacattattagagttgtctc |
24424234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 24424643 - 24424493
Alignment:
| Q |
1 |
gatcacattattcaacttcattgttcacaatgacaatattattttactcacgtcatatcttccctgtcatgaattatatagccatatataaagttctcat |
100 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24424643 |
gatcacattattcaacttcattgttcataatgacaatattattttactcacgtcatatcttccctgtcatgaattatatagccatatataaagttctcat |
24424544 |
T |
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| Q |
101 |
catgcaaatgttgttgtttgcaattattatgtttttcaaaacctgtagggg |
151 |
Q |
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| T |
24424543 |
catgcaaatgttgttgtttgcaattattatgtttttcaaaacctgtagggg |
24424493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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