View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6289_high_9 (Length: 398)
Name: NF6289_high_9
Description: NF6289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6289_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 18 - 381
Target Start/End: Original strand, 25184093 - 25184457
Alignment:
| Q |
18 |
tctaaaatatgtggtaatacttgcaattggtctgtaaaaaatactgtaatatgccggactacatcttacgagggttatatttgttttcaatggcattaag |
117 |
Q |
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| T |
25184093 |
tctaaaatatgtggtaatacttgcaattggtctgtaaaaaatactgtaatatgccggactacatcttacgagggttatatttgttttcaatggcattaag |
25184192 |
T |
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| Q |
118 |
taattattattaacgtaataaatttgtaatcttaataaatgttgtacgtggagtacttttatgtgtcgatgcttcttaattaaatgtcttatctagaggt |
217 |
Q |
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| T |
25184193 |
taattattattaacgtaataaatttgtaatcttaataaatgttgtacgtggagtacttatatgtgtcgatgcttcttaattcaatgtcttatctagaggt |
25184292 |
T |
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| Q |
218 |
ttgtgttttttaagtcttaagtctgtatatccgtttataagaagttgttggaacactaatgaattctagctagtggaaagaataaacacgatgtaagaat |
317 |
Q |
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| T |
25184293 |
ttgtgttttttaagtcttaagtctgtatatccgtttataagaagttgttggaacaccaatgaattctagctagtggaaagaataaacacgatgtaagaat |
25184392 |
T |
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| Q |
318 |
tagtttaggtatgacttaaaatgttttcatgttggagagacatacta-ctaataagtgtttatat |
381 |
Q |
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| T |
25184393 |
tagtttaggtatgacttaaaatgttttcaagttggagagacatactacctagtaaatgtttatat |
25184457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 171
Target Start/End: Original strand, 25229047 - 25229180
Alignment:
| Q |
34 |
atacttgcaattggtctgtaaaaaatactgtaatatgccggactacatcttacgagggttatatttgttttcaatggcattaagtaattattattaacgt |
133 |
Q |
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| T |
25229047 |
atacttgcaattggtctataacaaatcctggaccatgtcgcaatacatctcaagagggtaatgtttgttttcattgg----aataaataattattaatgt |
25229142 |
T |
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| Q |
134 |
aataaatttgtaatcttaataaatgttgtacgtggagt |
171 |
Q |
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| T |
25229143 |
aataaatttgcaatcttaataaatgccgtacttggagt |
25229180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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