View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6289_low_12 (Length: 393)
Name: NF6289_low_12
Description: NF6289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6289_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 69 - 375
Target Start/End: Complemental strand, 42180852 - 42180547
Alignment:
| Q |
69 |
ttatagaagtagattagtggtatttcacgtgacttaagaaactatgaaagacaaagatggggatcaattaaaatattgcctttattttacttttatataa |
168 |
Q |
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| T |
42180852 |
ttatagaagttgattagtggtatttcacgtgacttaagaaactatgaaagaaaaatatggggatcaattaaaatattgcctttattttacttttatataa |
42180753 |
T |
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| Q |
169 |
atcaatgtatcatccgccacaattgttaaggttaacctctcaaattaaaaaattgagttcaattaattttatgttggtcccttccaataaatatatcttc |
268 |
Q |
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| T |
42180752 |
atcaatgtatcatccgcaacaattgttaaggttaacctctcaaattaaaaaattgagatcaattaattttatgttggtcccttccaataaatatatcttc |
42180653 |
T |
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| Q |
269 |
aaacgtatcgagcaaataccaaactctaaaccaaatatctaggcttgtcnnnnnnnnnnttatatatccaaggacatcaagtatctctactcttccacca |
368 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
42180652 |
aaacgtatccggcaaataccaaactctaaaccaaatatctaggcttgtc-aaaaaaaaattatatatccaaggacatcaagtatctctactcttccacca |
42180554 |
T |
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| Q |
369 |
aatatat |
375 |
Q |
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||||||| |
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| T |
42180553 |
aatatat |
42180547 |
T |
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