View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6289_low_13 (Length: 361)

Name: NF6289_low_13
Description: NF6289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6289_low_13
NF6289_low_13
[»] chr8 (2 HSPs)
chr8 (1-352)||(11402739-11403091)
chr8 (259-329)||(11402306-11402376)
[»] chr5 (2 HSPs)
chr5 (117-322)||(35841855-35842060)
chr5 (117-322)||(12528962-12529167)
[»] chr2 (2 HSPs)
chr2 (117-322)||(42913075-42913280)
chr2 (117-329)||(42300721-42300933)
[»] chr1 (1 HSPs)
chr1 (117-322)||(29282216-29282421)
[»] chr4 (3 HSPs)
chr4 (117-322)||(27730175-27730380)
chr4 (117-322)||(45966142-45966347)
chr4 (113-322)||(24146874-24147083)
[»] chr6 (1 HSPs)
chr6 (117-322)||(29303875-29304080)


Alignment Details
Target: chr8 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 352
Target Start/End: Original strand, 11402739 - 11403091
Alignment:
Q  1 ttgtgcctaaaatttcaacggtgaaaacatctgtaattttgtatctcgtgtttgtaagaacttctgtcgctgccacggtttgtagaaccaaaattgtttc 100  Q
    ||||||||||||||||||||||||||||| ||||||||| || |||| ||||||||||||| ||| || ||||||||||| |||||||||||||||||||    
T  11402739 ttgtgcctaaaatttcaacggtgaaaacaactgtaatttggtctctcttgtttgtaagaacctctttctctgccacggttggtagaaccaaaattgtttc 11402838  T
Q  101 cacctcttcctcttgaaattattgtctctccattgatcgaagtttccacatcctcttcctctaaaagttcctcaacctctacctctaaagttttttcttc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11402839 cacctcttcctcttgaaattattgtctctccattgatcgaagtttccacgtcctcttcctctaaaagttcctcaacctctacctctaaagttttttcttc 11402938  T
Q  201 ctccattgttgaaattatcacgacctttactctctcccttctaaccggattcagcaacgttattgaggttcacctggcttttcatggcttcctcctttac 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11402939 ctccattgttgaaattatcacgacctttactctctcccttctaaccggattcagcaacgttattgaggttcacctggcttttcatggcttcctcctttac 11403038  T
Q  301 tttttcagtcttctccaatattttgttga-atgactttcgatacatcctttgc 352  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  11403039 tttttcagtcttctccaatattttgttgacatgactttcgatacatcctttgc 11403091  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 329
Target Start/End: Complemental strand, 11402376 - 11402306
Alignment:
Q  259 gttattgaggttcacctggcttttcatggcttcctcctttactttttcagtcttctccaatattttgttga 329  Q
    |||||||| |||||| || ||||||| ||||||||||||| |||| || ||||||| ||||||| ||||||    
T  11402376 gttattgaagttcacttgacttttcaaggcttcctcctttgctttctctgtcttctgcaatattctgttga 11402306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 98; Significance: 3e-48; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 117 - 322
Target Start/End: Complemental strand, 35842060 - 35841855
Alignment:
Q  117 aattattgtctctccattgatcgaagtttccacatcctcttcctctaaaagttcctcaacctctacctctaaagttttttcttcctccattgttgaaatt 216  Q
    |||| |||||||||||||| | |||||| |||| |||||||||||||||  |||||| |||||| ||||| || |||  |||||||||||||||||||||    
T  35842060 aattgttgtctctccattggttgaagttgccacgtcctcttcctctaaagcttcctcgacctcttcctctgaaatttcctcttcctccattgttgaaatt 35841961  T
Q  217 atcacgacctttactctctcccttctaaccggattcagcaacgttattgaggttcacctggcttttcatggcttcctcctttactttttcagtcttctcc 316  Q
     |||||| || |    || ||| ||| || ||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  35841960 gtcacgagctctggcttcacccatctgactggattcagcaacgttgttgaggttcacctggctcttcaaggcttcctcctttactttttcagtcttctcc 35841861  T
Q  317 aatatt 322  Q
    ||||||    
T  35841860 aatatt 35841855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 117 - 322
Target Start/End: Original strand, 12528962 - 12529167
Alignment:
Q  117 aattattgtctctccattgatcgaagtttccacatcctcttcctctaaaagttcctcaacctctacctctaaagttttttcttcctccattgttgaaatt 216  Q
    |||| |||||||||||||| | |||||| |||| |||||||||||||||  |||||| |||||| ||||| ||  ||  |||||||||||||||||||||    
T  12528962 aattgttgtctctccattggttgaagttgccacgtcctcttcctctaaagcttcctcgacctcttcctctgaaacttcctcttcctccattgttgaaatt 12529061  T
Q  217 atcacgacctttactctctcccttctaaccggattcagcaacgttattgaggttcacctggcttttcatggcttcctcctttactttttcagtcttctcc 316  Q
     ||||||  | | |  || ||| ||| || ||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||||||| ||||||    
T  12529062 gtcacgagttctgccttcacccatctgactggattcagcaacgttgttgaggttcacctggctcttcaaggcttcctcctttactttttcagtattctcc 12529161  T
Q  317 aatatt 322  Q
    ||||||    
T  12529162 aatatt 12529167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 98; Significance: 3e-48; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 117 - 322
Target Start/End: Original strand, 42913075 - 42913280
Alignment:
Q  117 aattattgtctctccattgatcgaagtttccacatcctcttcctctaaaagttcctcaacctctacctctaaagttttttcttcctccattgttgaaatt 216  Q
    |||| |||||||||||||| | |||||| |||| |||||||||||||||  |||||| |||||| ||||| || |||  |||||||||||||||||||||    
T  42913075 aattgttgtctctccattggttgaagttgccacgtcctcttcctctaaagcttcctcgacctcttcctctgaaatttcctcttcctccattgttgaaatt 42913174  T
Q  217 atcacgacctttactctctcccttctaaccggattcagcaacgttattgaggttcacctggcttttcatggcttcctcctttactttttcagtcttctcc 316  Q
     |||||| || |    || ||| ||| || ||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  42913175 gtcacgagctctggcttcacccatctgactggattcagcaacgttgttgaggttcacctggctcttcaaggcttcctcctttactttttcagtcttctcc 42913274  T
Q  317 aatatt 322  Q
    ||||||    
T  42913275 aatatt 42913280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 117 - 329
Target Start/End: Complemental strand, 42300933 - 42300721
Alignment:
Q  117 aattattgtctctccattgatcgaagtttccacatcctcttcctctaaaagttcctcaacctctacctctaaagttttttcttcctccattgttgaaatt 216  Q
    |||| |||||||||||||| | |||||| |||| |||||||||||||||  |||||| |||||| ||||| || |||  |||||||||||||||||||||    
T  42300933 aattgttgtctctccattggttgaagttgccacgtcctcttcctctaaagcttcctcgacctcttcctctgaaatttcctcttcctccattgttgaaatt 42300834  T
Q  217 atcacgacctttactctctcccttctaaccggattcagcaacgttattgaggttcacctggcttttcatggcttcctcctttactttttcagtcttctcc 316  Q
     |||||| || |    || ||| ||| || ||||||| ||| ||| ||||||||||||||||| |||| ||||||||||||||| |||||| ||||||||    
T  42300833 gtcacgagctctggcttcacccatctgactggattcaacaatgttgttgaggttcacctggctcttcaaggcttcctcctttacattttcactcttctcc 42300734  T
Q  317 aatattttgttga 329  Q
    |||||| ||||||    
T  42300733 aatattctgttga 42300721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 117 - 322
Target Start/End: Original strand, 29282216 - 29282421
Alignment:
Q  117 aattattgtctctccattgatcgaagtttccacatcctcttcctctaaaagttcctcaacctctacctctaaagttttttcttcctccattgttgaaatt 216  Q
    |||| |||||||||||||| | |||||| |||| |||||||||||||||  |||||| |||||| ||||| || |||  |||||||||||||||||||||    
T  29282216 aattgttgtctctccattggttgaagttgccacgtcctcttcctctaaagcttcctcgacctcttcctctgaaatttcctcttcctccattgttgaaatt 29282315  T
Q  217 atcacgacctttactctctcccttctaaccggattcagcaacgttattgaggttcacctggcttttcatggcttcctcctttactttttcagtcttctcc 316  Q
     |||||| || |    || ||| ||| || ||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  29282316 gtcacgagctctggcttcacccatctgactggattcagcaacgttgttgaggttcacctggctcttcaaggcttcctcctttactttttcagtcttctcc 29282415  T
Q  317 aatatt 322  Q
    ||||||    
T  29282416 aatatt 29282421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 94; Significance: 8e-46; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 117 - 322
Target Start/End: Original strand, 27730175 - 27730380
Alignment:
Q  117 aattattgtctctccattgatcgaagtttccacatcctcttcctctaaaagttcctcaacctctacctctaaagttttttcttcctccattgttgaaatt 216  Q
    |||| |||||||||||||| | |||||| |||| |||||||||||||||  |||||| |||||| ||||| || |||  |||||||||||||||||||||    
T  27730175 aattgttgtctctccattggttgaagttgccacgtcctcttcctctaaagcttcctcgacctcttcctctgaaatttcctcttcctccattgttgaaatt 27730274  T
Q  217 atcacgacctttactctctcccttctaaccggattcagcaacgttattgaggttcacctggcttttcatggcttcctcctttactttttcagtcttctcc 316  Q
     |||||| || |    || ||| ||| || ||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||| |||    
T  27730275 gtcacgagctctggcttcacccatctgactggattcagcaacgttgttgaggttcacctggctcttcaaggcttcctcctttactttttcagtcttttcc 27730374  T
Q  317 aatatt 322  Q
    ||||||    
T  27730375 aatatt 27730380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 117 - 322
Target Start/End: Complemental strand, 45966347 - 45966142
Alignment:
Q  117 aattattgtctctccattgatcgaagtttccacatcctcttcctctaaaagttcctcaacctctacctctaaagttttttcttcctccattgttgaaatt 216  Q
    |||| |||||||||||||| | |||||| |||| |||||||||||||||  |||||| |||||| ||||| || |||  |||||||||||||||||||||    
T  45966347 aattgttgtctctccattggttgaagttgccacgtcctcttcctctaaagcttcctcgacctcttcctctgaaatttcctcttcctccattgttgaaatt 45966248  T
Q  217 atcacgacctttactctctcccttctaaccggattcagcaacgttattgaggttcacctggcttttcatggcttcctcctttactttttcagtcttctcc 316  Q
     ||||||  | |    || ||| ||| || ||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  45966247 gtcacgagttctggcttcacccatctgactggattcagcaacgttgttgaggttcacctggctcttcaaggcttcctcctttactttttcagtcttctcc 45966148  T
Q  317 aatatt 322  Q
    ||||||    
T  45966147 aatatt 45966142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 113 - 322
Target Start/End: Complemental strand, 24147083 - 24146874
Alignment:
Q  113 ttgaaattattgtctctccattgatcgaagtttccacatcctcttcctctaaaagttcctcaacctctacctctaaagttttttcttcctccattgttga 212  Q
    |||||||| |||||||||||||| | |||||| |||| ||||||||||||||| ||||||| |||| || |||| || |||  ||||  |||| ||||||    
T  24147083 ttgaaattgttgtctctccattggttgaagttgccacgtcctcttcctctaaaggttcctcgacctttaactctgaaatttcctcttaatccaatgttga 24146984  T
Q  213 aattatcacgacctttactctctcccttctaaccggattcagcaacgttattgaggttcacctggcttttcatggcttcctcctttactttttcagtctt 312  Q
    |||| ||||   || |    || ||| |||||  ||||| | ||| ||| ||||| ||||||||||| |||| |||||||||||||||||||||||||||    
T  24146983 aattgtcacattctctggcttcacccatctaattggattaaacaatgttgttgagcttcacctggctcttcaaggcttcctcctttactttttcagtctt 24146884  T
Q  313 ctccaatatt 322  Q
     |||||||||    
T  24146883 atccaatatt 24146874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 117 - 322
Target Start/End: Complemental strand, 29304080 - 29303875
Alignment:
Q  117 aattattgtctctccattgatcgaagtttccacatcctcttcctctaaaagttcctcaacctctacctctaaagttttttcttcctccattgttgaaatt 216  Q
    |||| |||||||||||||| | |||||| |||| |||||||||||||||  |||||| | |||| ||||| ||  ||  |||||||||||||||||||||    
T  29304080 aattgttgtctctccattggttgaagttgccacgtcctcttcctctaaagcttcctcgatctcttcctctgaaacttcctcttcctccattgttgaaatt 29303981  T
Q  217 atcacgacctttactctctcccttctaaccggattcagcaacgttattgaggttcacctggcttttcatggcttcctcctttactttttcagtcttctcc 316  Q
     ||||||  | ||   || ||| ||| || ||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  29303980 gtcacgagttctagcttcacccatctgactggattcagcaacgttgttgaggttcacctggctcttcaaggcttcctcctttactttttcagtcttctcc 29303881  T
Q  317 aatatt 322  Q
    ||||||    
T  29303880 aatatt 29303875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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